Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq572 334 7e-87
seq686 118 9e-22
seq356 113 4e-20
seq863 105 6e-18
>seq572
Length=609512
Score = 334 bits (370), Expect = 7e-87
Identities = 1196/1849 (65%), Gaps = 40/1849 (2%)
Strand=Plus/Plus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
|| || || || |||||||||||||| ||||| | |||||| || || || ||
Sbjct 16464 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTG 16523
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || |||| | ||||| | || | ||||| ||| |||||
Sbjct 16524 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATG 16583
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324
|| || || || ||||| ||||| | | | || ||| || || ||||| ||||||
Sbjct 16584 AAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGATATCTCCCAGACGGTC 16643
Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATT 22383
|||||||| | ||| ||| | ||| | | | | || |||||| || ||||| |
Sbjct 16644 TTGTACAGAGCCTTGACCTC-AGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTC 16702
Query 22384 GTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGAC 22443
| ||||| || || || | |||| ||||| || ||| || | ||| || |
Sbjct 16703 GGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAA 16762
Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGG 22502
|| |||| || || || |||||||||| ||||| | || |||||||| |||||||
Sbjct 16763 CAACCAGGGGTTAACAACCTGGAACTCGCCGG-CAAGAACACGACGTTGGTAGATGTTGG 16821
Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562
| ||| | || ||||| | || ||||| |||| ||||| | || || || || ||||
Sbjct 16822 AGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCA 16881
Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCAT 22620
| || || | || | ||| | || ||||||| |||| | | || ||| |
Sbjct 16882 TGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAGT 16941
Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACG 22678
| ||| ||||| || || || ||| | ||||| |||||| ||||| || | | ||
Sbjct 16942 C--CCAATCCCAGAGGTCAGAGGGCTTGACATT---CCACATGTCGTACTGGAGGATACC 16996
Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCG 22738
| | || ||| ||| |||||||| ||| | || | | ||| || |
Sbjct 16997 CTGGGAGATA--GGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGA 17054
Query 22739 -CAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC--- 22794
||| || | || ||| || || ||||||||||| |||||||| | ||
Sbjct 17055 ACAGACATGGTCAGA-GCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACG 17113
Query 22795 GGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854
||| ||| || || || | ||||| || | | ||| || || || | ||||||
Sbjct 17114 GGCCTCGG-GAGACT--CGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTG 17170
Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAG 22910
|| || | ||| || || |||| || || || |||| |||||| | |
Sbjct 17171 GACACCGAGACCAATGGGGCGGTGACGCATGTTG----CTGTTGCGAGCCTCGGGAACGG 17226
Query 22911 GATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNN 22970
| || || ||| || | |||||||||| | || | | || |
Sbjct 17227 GGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGT 17286
Query 22971 NNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACAAACTTGTTGACGGCGATC 23026
| |||||||| || || || ||||| |||| || || | || |
Sbjct 17287 GAAGCTTCTGGAAGTCGTAGACACCATCG-TTGTAGTCAACGAAGGTGGGCAGAGCAAGG 17345
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|| || | ||||| || || |||||||| | |||||| | || || || ||
Sbjct 17346 GAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAG 17405
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || || | || |||||||||| || || ||| | ||||
Sbjct 17406 AGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCC 17465
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
||||| |||||| | || |||| |||||| ||| | ||||| ||| || ||| |
Sbjct 17466 TTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGC 17525
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
|||| || | | ||| || ||| ||| || ||||||||| | |||||| ||
Sbjct 17526 TTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGC 17584
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
|| || || | ||||| ||||| |||||||| || | | | || |||||||| |
Sbjct 17585 CTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGT 17644
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| | || || || || | |||| || ||||| || ||||| |||||| |||
Sbjct 17645 CCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAA 17704
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
|| || ||||| || |||||||| ||||| |||||| ||| |||| || || ||
Sbjct 17705 AAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAA 17764
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
||||| || ||||| ||||| ||||| | || || ||||| || | ||| ||||| ||
Sbjct 17765 GACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACC 17824
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
|||||||||||| || || |||||||| | || | ||||| || | || |||||| ||
Sbjct 17825 CTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 17884
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
| |||| ||| || | | || || | || || | |||| ||| || |||
Sbjct 17885 GGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 17944
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
||||| || || || || ||||| ||||| || || ||||||||||| |||||
Sbjct 17945 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 18004
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG-GGCGTAG 23744
|| ||| || || | |||| | ||| || ||||||| || || || || |||
Sbjct 18005 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTAC 18063
Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACG 23804
| || ||| ||||| ||| |||||| || ||| | | ||||| || ||||| |
Sbjct 18064 CAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGG 18123
Query 23805 TGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGT 23864
| |||||| || || | || || || || |||| || || ||||| |||||||
Sbjct 18124 TCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATGT 18183
Query 23865 ATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTT 23924
|| ||||||||| | | ||| | || |||| ||| ||||| | || || || |
Sbjct 18184 GCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATCTTTCCAGGGTCT 18243
Query 23925 TAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
| || || || || | ||||| ||||| || |||| || ||||| ||
Sbjct 18244 TGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGA 18292
>seq686
Length=266282
Score = 118 bits (130), Expect = 9e-22
Identities = 234/344 (68%), Gaps = 8/344 (2%)
Strand=Plus/Minus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|||||| || | || | || || ||||| || || ||||| ||||| || |||
Sbjct 148931 TTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTT 148872
Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082
|| | || |||||| | ||||| || || || ||||| || ||||| || |||||||
Sbjct 148871 GCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAG 148812
Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142
| || || || ||||||||||| || || || ||||| ||||| |||||||||||
Sbjct 148811 CTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTCTCAC--- 148755
Query 58143 GTCAATAAACCGACGC----GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGAT 58198
|||| |||| | | | | ||| |||||| ||| || || ||| |||
Sbjct 148754 CTCAA-GCACCGCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGAT 148696
Query 58199 CGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTT 58258
|| | ||||| |||| || || || || || | ||||| |||||| | ||
Sbjct 148695 TGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTT 148636
Query 58259 GATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302
|||| ||||||||||||| ||||||||| | || || |||
Sbjct 148635 GATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCG 148592
Score = 91.5 bits (100), Expect = 1e-13
Identities = 201/300 (67%), Gaps = 5/300 (2%)
Strand=Plus/Minus
Query 57563 TCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622
|||||| | ||| | |||||||| ||||| || || || || ||||||| ||| || |
Sbjct 149385 TCCAGA--TCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGAT 149328
Query 57623 AGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTT 57679
|| || || |||||||| ||| ||| | | |||| || ||||| | ||
Sbjct 149327 TGATCTCTCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTT 149268
Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739
|| ||| | | || || ||||||||||| || ||||| || |||||||| | ||
Sbjct 149267 CATCTCTCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGT 149208
Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799
||| | || || || || || || | ||||| | ||||| ||||| || || |
Sbjct 149207 CGAGCGCTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 149148
Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| || ||| | || || || | || || || |||||||| || ||| | |||||
Sbjct 149147 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 149088
>seq356
Length=254992
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| || || ||||| || | || || || | ||
Sbjct 83954 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACGTTGGAAGTCGAGTCATCT 83895
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||||||||| || | || |||||||||
Sbjct 83894 GACACGATTGATAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 83835
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || ||||||||||| | ||| ||||||| || ||
Sbjct 83834 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACTTTGAGCGACTACAAT 83775
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || ||||| || || |||||||| ||
Sbjct 83774 ATCCAGAAGGAATCAACCCTCCATCTGGTCCT 83743
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| || || ||||| ||||| || |||| |||||| | ||
Sbjct 84182 ATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 84123
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || || || ||||| || | || |||||||||
Sbjct 84122 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCCGACCAG 84063
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || ||||| || || ||| | || || | || || ||||| |||
Sbjct 84062 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCGGATTACAAC 84003
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || || ||||| ||||| || || | ||| | || ||||
Sbjct 84002 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGCCTGCGTGGTGGTA 83954
>seq863
Length=517823
Score = 105 bits (116), Expect = 6e-18
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| ||||| ||||| || |||||| | || || ||
Sbjct 7254 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGT 7313
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
||||||||| |||| | ||||| | || ||||||||| ||| | || ||||
Sbjct 7314 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 7373
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
||||||||||||| || ||||| || || ||| | || |||
Sbjct 7374 ACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGAC 7414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445761223537680
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