Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq572 334 7e-87 seq686 118 9e-22 seq356 113 4e-20 seq863 105 6e-18 >seq572 Length=609512 Score = 334 bits (370), Expect = 7e-87 Identities = 1196/1849 (65%), Gaps = 40/1849 (2%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || || || |||||||||||||| ||||| | |||||| || || || || Sbjct 16464 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTG 16523 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| | ||||| | || | ||||| ||| ||||| Sbjct 16524 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATG 16583 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | | | || ||| || || ||||| |||||| Sbjct 16584 AAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGATATCTCCCAGACGGTC 16643 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATT 22383 |||||||| | ||| ||| | ||| | | | | || |||||| || ||||| | Sbjct 16644 TTGTACAGAGCCTTGACCTC-AGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTC 16702 Query 22384 GTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGAC 22443 | ||||| || || || | |||| ||||| || ||| || | ||| || | Sbjct 16703 GGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAA 16762 Query 22444 CAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGG 22502 || |||| || || || |||||||||| ||||| | || |||||||| ||||||| Sbjct 16763 CAACCAGGGGTTAACAACCTGGAACTCGCCGG-CAAGAACACGACGTTGGTAGATGTTGG 16821 Query 22503 ATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCA 22562 | ||| | || ||||| | || ||||| |||| ||||| | || || || || |||| Sbjct 16822 AGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCA 16881 Query 22563 TCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCAT 22620 | || || | || | ||| | || ||||||| |||| | | || ||| | Sbjct 16882 TGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAGT 16941 Query 22621 CGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACG 22678 | ||| ||||| || || || ||| | ||||| |||||| ||||| || | | || Sbjct 16942 C--CCAATCCCAGAGGTCAGAGGGCTTGACATT---CCACATGTCGTACTGGAGGATACC 16996 Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCG 22738 | | || ||| ||| |||||||| ||| | || | | ||| || | Sbjct 16997 CTGGGAGATA--GGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGA 17054 Query 22739 -CAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC--- 22794 ||| || | || ||| || || ||||||||||| |||||||| | || Sbjct 17055 ACAGACATGGTCAGA-GCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACG 17113 Query 22795 GGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854 ||| ||| || || || | ||||| || | | ||| || || || | |||||| Sbjct 17114 GGCCTCGG-GAGACT--CGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTG 17170 Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAG 22910 || || | ||| || || |||| || || || |||| |||||| | | Sbjct 17171 GACACCGAGACCAATGGGGCGGTGACGCATGTTG----CTGTTGCGAGCCTCGGGAACGG 17226 Query 22911 GATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNN 22970 | || || ||| || | |||||||||| | || | | || | Sbjct 17227 GGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGT 17286 Query 22971 NNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACAAACTTGTTGACGGCGATC 23026 | |||||||| || || || ||||| |||| || || | || | Sbjct 17287 GAAGCTTCTGGAAGTCGTAGACACCATCG-TTGTAGTCAACGAAGGTGGGCAGAGCAAGG 17345 Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || | ||||| || || |||||||| | |||||| | || || || || Sbjct 17346 GAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAG 17405 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || |||||||||| || || ||| | |||| Sbjct 17406 AGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCC 17465 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 ||||| |||||| | || |||| |||||| ||| | ||||| ||| || ||| | Sbjct 17466 TTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGC 17525 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 |||| || | | ||| || ||| ||| || ||||||||| | |||||| || Sbjct 17526 TTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGC 17584 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || | ||||| ||||| |||||||| || | | | || |||||||| | Sbjct 17585 CTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGT 17644 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| | || || || || | |||| || ||||| || ||||| |||||| ||| Sbjct 17645 CCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAA 17704 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 || || ||||| || |||||||| ||||| |||||| ||| |||| || || || Sbjct 17705 AAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAA 17764 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 ||||| || ||||| ||||| ||||| | || || ||||| || | ||| ||||| || Sbjct 17765 GACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACC 17824 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 |||||||||||| || || |||||||| | || | ||||| || | || |||||| || Sbjct 17825 CTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 17884 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | |||| ||| || | | || || | || || | |||| ||| || ||| Sbjct 17885 GGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 17944 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 ||||| || || || || ||||| ||||| || || ||||||||||| ||||| Sbjct 17945 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 18004 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG-GGCGTAG 23744 || ||| || || | |||| | ||| || ||||||| || || || || ||| Sbjct 18005 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTAC 18063 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACG 23804 | || ||| ||||| ||| |||||| || ||| | | ||||| || ||||| | Sbjct 18064 CAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGG 18123 Query 23805 TGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGT 23864 | |||||| || || | || || || || |||| || || ||||| ||||||| Sbjct 18124 TCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACACGCATGATCATGT 18183 Query 23865 ATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTT 23924 || ||||||||| | | ||| | || |||| ||| ||||| | || || || | Sbjct 18184 GCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATCTTTCCAGGGTCT 18243 Query 23925 TAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | || || || || | ||||| ||||| || |||| || ||||| || Sbjct 18244 TGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGA 18292 >seq686 Length=266282 Score = 118 bits (130), Expect = 9e-22 Identities = 234/344 (68%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||||| || | || | || || ||||| || || ||||| ||||| || ||| Sbjct 148931 TTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTT 148872 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || | || |||||| | ||||| || || || ||||| || ||||| || ||||||| Sbjct 148871 GCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAG 148812 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142 | || || || ||||||||||| || || || ||||| ||||| ||||||||||| Sbjct 148811 CTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTCTCAC--- 148755 Query 58143 GTCAATAAACCGACGC----GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGAT 58198 |||| |||| | | | | ||| |||||| ||| || || ||| ||| Sbjct 148754 CTCAA-GCACCGCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGAT 148696 Query 58199 CGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTT 58258 || | ||||| |||| || || || || || | ||||| |||||| | || Sbjct 148695 TGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTT 148636 Query 58259 GATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 |||| ||||||||||||| ||||||||| | || || ||| Sbjct 148635 GATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCG 148592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 201/300 (67%), Gaps = 5/300 (2%) Strand=Plus/Minus Query 57563 TCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 |||||| | ||| | |||||||| ||||| || || || || ||||||| ||| || | Sbjct 149385 TCCAGA--TCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGAT 149328 Query 57623 AGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTT 57679 || || || |||||||| ||| ||| | | |||| || ||||| | || Sbjct 149327 TGATCTCTCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTT 149268 Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || ||| | | || || ||||||||||| || ||||| || |||||||| | || Sbjct 149267 CATCTCTCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGT 149208 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 ||| | || || || || || || | ||||| | ||||| ||||| || || | Sbjct 149207 CGAGCGCTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGAT 149148 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||| | || || || | || || || |||||||| || ||| | ||||| Sbjct 149147 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGA 149088 >seq356 Length=254992 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || ||||| || | || || || | || Sbjct 83954 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACGTTGGAAGTCGAGTCATCT 83895 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||| || | || ||||||||| Sbjct 83894 GACACGATTGATAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 83835 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||||||||||| | ||| ||||||| || || Sbjct 83834 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACTTTGAGCGACTACAAT 83775 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || || |||||||| || Sbjct 83774 ATCCAGAAGGAATCAACCCTCCATCTGGTCCT 83743 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| ||||| || |||| |||||| | || Sbjct 84182 ATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 84123 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || || ||||| || | || ||||||||| Sbjct 84122 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCCGACCAG 84063 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||| | || || | || || ||||| ||| Sbjct 84062 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCGGATTACAAC 84003 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| ||||| || || | ||| | || |||| Sbjct 84002 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGCCTGCGTGGTGGTA 83954 >seq863 Length=517823 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 7254 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGT 7313 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 7314 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 7373 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||||||| || ||||| || || ||| | || ||| Sbjct 7374 ACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGAC 7414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761223537680