Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq686 147 4e-30 seq572 93.3 8e-14 >seq686 Length=266282 Score = 147 bits (162), Expect = 4e-30 Identities = 301/441 (68%), Gaps = 11/441 (2%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || ||||| || |||||||| || ||||| || || ||||| || ||| Sbjct 148916 GTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGG 148857 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| |||| |||||| ||| |||| || | ||| Sbjct 148856 CTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGAC 148797 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA-TACCCC 102096 || |||||||| ||||||||| ||| || ||| | | | | ||| | Sbjct 148796 GAGGGTCTTCACACCGACTTTGCCTGC---CTCTTG---TACTCTCACCTCAAGCACCGC 148743 Query 102097 ATCAAGAGAAAGG--ATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| | ||| ||| || || || ||| |||||| ||||| || || || Sbjct 148742 CCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTC 148683 Query 102155 CTCACAGTTTCCCTG-CCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 ||||| | | ||| |||| || | || ||||||| ||| ||||||| ||||| Sbjct 148682 CTCACTGAGGCTCTGCCCTGCGCTCTT-CTCGGCATGAACTCCAACTTGATGAAGCAGTA 148624 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273 |||||| || || || || || |||| | | || || ||| ||| || Sbjct 148623 CATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTC 148564 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 | ||||||||||| |||||||| || || ||||| | ||||||||||| ||||| Sbjct 148563 TTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGA 148504 Query 102334 AAAGAGAGTCGCCGAGTATCA 102354 ||| | ||||| || || || Sbjct 148503 GAAGCGTGTCGCTGACTACCA 148483 >seq572 Length=609512 Score = 93.3 bits (102), Expect = 8e-14 Identities = 121/168 (72%), Gaps = 12/168 (7%) Strand=Plus/Plus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||| || ||| || ||||||||||| |||| ||||| ||||| | | ||| Sbjct 17549 ACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTC 17608 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505 | |||||||||||||| | ||||||||| |||| ||| ||||| || Sbjct 17609 AGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTT------CTC 17662 Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 ||||||| |||||| ||||| | | ||||| ||| ||||||| || Sbjct 17663 GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTC 17710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989572221167195