Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq686 87.8 2e-12
>seq686
Length=266282
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||| ||| ||||||||||| | || | ||||| || || || ||
Sbjct 148771 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 148830
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| ||||| || |||||||| || |||||||| ||||| || || | ||| ||||||
Sbjct 148831 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 148890
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 33758
|| || || || || |||||||||| || | || | | || | | ||||
Sbjct 148891 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 148950
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33787
|||||||| | ||||| || ||||||||
Sbjct 148951 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 148979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629810286243120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |