Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq686 86.0 8e-12 >seq686 Length=266282 Score = 86.0 bits (94), Expect = 8e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| ||||||||||| | || | |||||||| || || || Sbjct 148771 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 148830 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| || |||||||| || |||||||| ||||| ||||| | || ||||| Sbjct 148831 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 148890 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAA 36302 || || || || || |||||||||| Sbjct 148891 ATACCCTCAACAGCGGCAAAGGCAA 148915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165156968360