Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq686 105 1e-17
>seq686
Length=266282
Score = 105 bits (116), Expect = 1e-17
Identities = 149/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || || ||| ||| ||||||||||| | || || |||||||| || || ||
Sbjct 148771 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 148830
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|| ||||| || |||||||| || |||||||| ||||| ||||| | || ||||||
Sbjct 148831 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 148890
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT---GT 50136
|| || || || |||||||||||||| || | || | | || | | ||||
Sbjct 148891 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 148950
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165
|||||||| | ||||| || ||||||||
Sbjct 148951 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 148979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718260459103560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |