Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq572 172 8e-38 seq686 158 2e-33 >seq572 Length=609512 Score = 172 bits (190), Expect = 8e-38 Identities = 318/461 (69%), Gaps = 4/461 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || |||||| | || ||||| | || || |||||||| ||| Sbjct 17827 CAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATCTACCTTGAGCCCTGGCACGCCGAC 17768 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || || ||||||| ||| |||| || |||| || ||| | ||| Sbjct 17767 GTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGAC 17708 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || ||| ||||||||||| | ||| | | | | || Sbjct 17707 CTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAC 17648 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| | || || || ||| | || |||| ||||| ||||| Sbjct 17647 TGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTACGGCGAGGAGTTC 17588 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| | ||||||| |||||| | || |||| | || | || | Sbjct 17587 GAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCA-TCAAGGC-CC 17530 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||||||| |||||||| | || | ||| || | Sbjct 17529 AGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTTT 17470 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| | | || ||||| |||||||| || | || || ||| |||||| Sbjct 17469 ACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACTATCCGCAGCTCCA 17410 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 | || ||||| || || | |||||| | | || |||||| Sbjct 17409 ACCTCTGCACTGAGATCATTGAGTACTGCGCACCCGACGAG 17369 >seq686 Length=266282 Score = 158 bits (174), Expect = 2e-33 Identities = 581/902 (64%), Gaps = 86/902 (10%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||| ||| | ||||| Sbjct 149380 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 149321 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||| | | | | | || || |||| | || || || Sbjct 149320 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GATGATGAGAAGTACTTCATCTC 149262 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 |||||| | |||||||| |||| || || || ||||||||||| || || || || | Sbjct 149261 TCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGTCGAG-C 149203 Query 125197 GATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 | ||||| ||| | ||| | || |||| ||| ||||| ||||| ||||| |||| Sbjct 149202 GCTTCTCCGGCGAGGT--CCAGGTCCCCGAGGC-TCGCTGCTTCTACGGCTTCCAGATCA 149146 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT------- 125306 |||| |||||| | ||||| || | ||||| || || |||| ||||| Sbjct 149145 TGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGC 149086 Query 125307 -CGCGATCCGCA-----------------------------ACGTAAACACAT---GCTC 125333 |||| |||| |||| ||||||| || | Sbjct 149085 CCGCGCAGCGCACCTACCTCTTCAACGCCATTGACACCAGTACGTGAACACATCTCGCGC 149026 Query 125334 TTTAACGCA---ATCGA----------CACGGTGCCGTCTATACGTAAAAAGGCTCAATG 125380 | | || |||| ||| || || | || || || |||||| | || Sbjct 149025 CTACATGCCCGCATCGCTAACTACCATCACAGTCCCTGCCATTCGCAAGAAGGCTGACTG 148966 Query 125381 GGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGC 125440 || | ||||||| || || || || || | |||| | | ||||| || || || Sbjct 148965 GGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTGCCTTTGC 148906 Query 125441 CGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCG 125500 ||| || ||||| |||||||| ||| |||||| |||||||||||||||||||||| Sbjct 148905 CGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCAAGAAGCG 148846 Query 125501 CGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACA 125560 || |||||||| || ||||| | |||||| | || || || |||||||| || || Sbjct 148845 TGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCA 148786 Query 125561 CTGTGACTTTGCCATTCTACTGT-TTCGCAACT--ATCTGCGTCCCGA-GTGCAGATCCA 125616 | ||||||||| || ||| || || || | | || ||| | |||| || Sbjct 148785 CACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCACCGCCCCAACAAGCAGGTC-- 148728 Query 125617 GCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAA 125676 || ||| ||||| | || |||||||| | ||| || || ||||| || | Sbjct 148727 ---AT--TGAGGACATCATCGTT------GATGCCGTCAAGATTGAGCAGGAGTTCCTCA 148679 Query 125677 CCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAG 125736 | || | || || | | | |||||||||| ||| | ||| ||||||| | Sbjct 148678 CTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTG 148619 Query 125737 AGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCA 125793 |||| || || || || || ||| || ||||| || |||| | ||||| | Sbjct 148618 AGTTCGTTGCCGACCGCCTCCTGGTCG---CTCTTGGCAACGACAAGGTCTACAAGTCTT 148562 Query 125794 AGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGA 125853 || ||||| || |||||| | ||| || || | || ||||||||||| || |||| Sbjct 148561 CCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGA 148502 Query 125854 AG 125855 || Sbjct 148501 AG 148500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050594450040