Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq572 172 8e-38
seq686 158 2e-33
>seq572
Length=609512
Score = 172 bits (190), Expect = 8e-38
Identities = 318/461 (69%), Gaps = 4/461 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || |||||| | || ||||| | || || |||||||| |||
Sbjct 17827 CAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATCTACCTTGAGCCCTGGCACGCCGAC 17768
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || || || ||||||| ||| |||| || |||| || ||| | |||
Sbjct 17767 GTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGAC 17708
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||| | || ||| ||||||||||| | ||| | | | | ||
Sbjct 17707 CTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAC 17648
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| ||| ||||||||| | || || || ||| | || |||| ||||| |||||
Sbjct 17647 TGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTACGGCGAGGAGTTC 17588
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174
|||||| |||| | ||||||| |||||| | || |||| | || | || |
Sbjct 17587 GAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCA-TCAAGGC-CC 17530
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| || ||| | |||||| | ||||||| |||||||| | || | ||| || |
Sbjct 17529 AGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCTTT 17470
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| | | || ||||| |||||||| || | || || ||| ||||||
Sbjct 17469 ACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACTATCCGCAGCTCCA 17410
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
| || ||||| || || | |||||| | | || ||||||
Sbjct 17409 ACCTCTGCACTGAGATCATTGAGTACTGCGCACCCGACGAG 17369
>seq686
Length=266282
Score = 158 bits (174), Expect = 2e-33
Identities = 581/902 (64%), Gaps = 86/902 (10%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||||| |||| ||||| ||||| | ||| ||| | |||||
Sbjct 149380 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 149321
Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|||||||| || |||| ||| | | | | | || || |||| | || || ||
Sbjct 149320 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GATGATGAGAAGTACTTCATCTC 149262
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196
|||||| | |||||||| |||| || || || ||||||||||| || || || || |
Sbjct 149261 TCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGTCGAG-C 149203
Query 125197 GATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
| ||||| ||| | ||| | || |||| ||| ||||| ||||| ||||| ||||
Sbjct 149202 GCTTCTCCGGCGAGGT--CCAGGTCCCCGAGGC-TCGCTGCTTCTACGGCTTCCAGATCA 149146
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT------- 125306
|||| |||||| | ||||| || | ||||| || || |||| |||||
Sbjct 149145 TGATGGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGC 149086
Query 125307 -CGCGATCCGCA-----------------------------ACGTAAACACAT---GCTC 125333
|||| |||| |||| ||||||| || |
Sbjct 149085 CCGCGCAGCGCACCTACCTCTTCAACGCCATTGACACCAGTACGTGAACACATCTCGCGC 149026
Query 125334 TTTAACGCA---ATCGA----------CACGGTGCCGTCTATACGTAAAAAGGCTCAATG 125380
| | || |||| ||| || || | || || || |||||| | ||
Sbjct 149025 CTACATGCCCGCATCGCTAACTACCATCACAGTCCCTGCCATTCGCAAGAAGGCTGACTG 148966
Query 125381 GGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGC 125440
|| | ||||||| || || || || || | |||| | | ||||| || || ||
Sbjct 148965 GGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTGCCTTTGC 148906
Query 125441 CGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCG 125500
||| || ||||| |||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 148905 CGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCAAGAAGCG 148846
Query 125501 CGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACA 125560
|| |||||||| || ||||| | |||||| | || || || |||||||| || ||
Sbjct 148845 TGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCA 148786
Query 125561 CTGTGACTTTGCCATTCTACTGT-TTCGCAACT--ATCTGCGTCCCGA-GTGCAGATCCA 125616
| ||||||||| || ||| || || || | | || ||| | |||| ||
Sbjct 148785 CACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCACCGCCCCAACAAGCAGGTC-- 148728
Query 125617 GCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAA 125676
|| ||| ||||| | || |||||||| | ||| || || ||||| || |
Sbjct 148727 ---AT--TGAGGACATCATCGTT------GATGCCGTCAAGATTGAGCAGGAGTTCCTCA 148679
Query 125677 CCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAG 125736
| || | || || | | | |||||||||| ||| | ||| ||||||| |
Sbjct 148678 CTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTG 148619
Query 125737 AGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCA 125793
|||| || || || || || ||| || ||||| || |||| | ||||| |
Sbjct 148618 AGTTCGTTGCCGACCGCCTCCTGGTCG---CTCTTGGCAACGACAAGGTCTACAAGTCTT 148562
Query 125794 AGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGA 125853
|| ||||| || |||||| | ||| || || | || ||||||||||| || ||||
Sbjct 148561 CCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGA 148502
Query 125854 AG 125855
||
Sbjct 148501 AG 148500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741050594450040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |