Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq356 104 5e-17 seq686 87.8 4e-12 >seq356 Length=254992 Score = 104 bits (114), Expect = 5e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || || || | || || || ||||| || ||| Sbjct 84214 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGTTGCTTGCCA 84273 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| || ||||| || || || || |||||||||||||| | || Sbjct 84274 GCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTG 84333 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| || || ||||| || || || ||||| ||||| || || Sbjct 84334 ACATTGTCGATAGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGCGTC 84393 Query 104543 TTTAC 104547 || || Sbjct 84394 TTGAC 84398 >seq686 Length=266282 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 269085 CTGAATGGGCTCTGAAATGGATAAACGAT-AGCGCGCCT--TACGGAGAAAGGTTAGTTG 269141 |||| ||||| ||||| ||||| | |||| || | ||| | || | | | |||| Sbjct 148972 CTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTG 148913 Query 269142 CTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGA 269201 | ||||||||||| || ||||| ||||| || |||||||| | ||||||||| | | Sbjct 148912 CCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCA 148853 Query 269202 AGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261 |||| | || || ||||| || | || ||||| ||||| | || | | ||||| | Sbjct 148852 AGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 148793 Query 269262 GTTTACACTGCGACTTCGCTTG 269283 || | ||| |||||| || || Sbjct 148792 GTCTTCACACCGACTTTGCCTG 148771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151384695120732