Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq356 104 5e-17
seq686 87.8 4e-12
>seq356
Length=254992
Score = 104 bits (114), Expect = 5e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| || || || | || || || ||||| || |||
Sbjct 84214 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGTTGCTTGCCA 84273
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||| || ||||| || || || || |||||||||||||| | ||
Sbjct 84274 GCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTG 84333
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||| || || ||||| || || || ||||| ||||| || ||
Sbjct 84334 ACATTGTCGATAGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGCGTC 84393
Query 104543 TTTAC 104547
|| ||
Sbjct 84394 TTGAC 84398
>seq686
Length=266282
Score = 87.8 bits (96), Expect = 4e-12
Identities = 142/202 (70%), Gaps = 3/202 (1%)
Strand=Plus/Minus
Query 269085 CTGAATGGGCTCTGAAATGGATAAACGAT-AGCGCGCCT--TACGGAGAAAGGTTAGTTG 269141
|||| ||||| ||||| ||||| | |||| || | ||| | || | | | ||||
Sbjct 148972 CTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTG 148913
Query 269142 CTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGA 269201
| ||||||||||| || ||||| ||||| || |||||||| | ||||||||| | |
Sbjct 148912 CCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCA 148853
Query 269202 AGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAG 269261
|||| | || || ||||| || | || ||||| ||||| | || | | ||||| |
Sbjct 148852 AGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 148793
Query 269262 GTTTACACTGCGACTTCGCTTG 269283
|| | ||| |||||| || ||
Sbjct 148792 GTCTTCACACCGACTTTGCCTG 148771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151384695120732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |