Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq121 127 2e-24 >seq121 Length=229515 Score = 127 bits (140), Expect = 2e-24 Identities = 182/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||| ||||| ||||| ||||| | | | || || || || ||||| Sbjct 193249 ACGCCGGTGCTGCCGAACCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCG 193190 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || ||||| | | || ||||||| ||| ||||| || || ||||||||| Sbjct 193189 ACGACCTCGGG-AGTGAAGATGCGCTCGATGATGAGCTGGGCGATGCGGTCGCCCTCAGC 193131 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 || || |||||| ||| | || |||||| || | || || | |||||||||||| Sbjct 193130 GACTTCAAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTC 193071 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 |||||| || ||||| ||||| ||||||||||| |||| || ||||| |||||||| Sbjct 193070 GGCGTCGATGACGCCGGCGCCGGTGTCGATGAAGTTCTTGGAGGCGAGGCCAGAGCGGGG 193011 Query 5740 AGCCACGCGGCCGT 5753 ||| |||||||||| Sbjct 193010 AGCAACGCGGCCGT 192997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430049530843448