Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq121 127 2e-24
>seq121
Length=229515
Score = 127 bits (140), Expect = 2e-24
Identities = 182/254 (72%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||| ||| ||||| ||||| ||||| | | | || || || || |||||
Sbjct 193249 ACGCCGGTGCTGCCGAACCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCG 193190
Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
| || ||||| | | || ||||||| ||| ||||| || || |||||||||
Sbjct 193189 ACGACCTCGGG-AGTGAAGATGCGCTCGATGATGAGCTGGGCGATGCGGTCGCCCTCAGC 193131
Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679
|| || |||||| ||| | || |||||| || | || || | ||||||||||||
Sbjct 193130 GACTTCAAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTC 193071
Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739
|||||| || ||||| ||||| ||||||||||| |||| || ||||| ||||||||
Sbjct 193070 GGCGTCGATGACGCCGGCGCCGGTGTCGATGAAGTTCTTGGAGGCGAGGCCAGAGCGGGG 193011
Query 5740 AGCCACGCGGCCGT 5753
||| ||||||||||
Sbjct 193010 AGCAACGCGGCCGT 192997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430049530843448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |