Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq356 89.7 5e-13
>seq356
Length=254992
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
|| |||||||| || | || || ||||||| |||| ||| |||| ||| |||||
Sbjct 83758 GTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCCAACTGCTTTCCA 83817
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
| ||||| | | ||||| || ||||| ||||| || ||||| | || || | |||
Sbjct 83818 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTC 83877
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
||| | | ||||||| ||||| || | ||| || || |||||||| || ||
Sbjct 83878 ACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTTCCAGTCAGCGTC 83937
Query 94991 TTCACAAAGATCTGCAT 95007
|| || |||||||||||
Sbjct 83938 TTGACGAAGATCTGCAT 83954
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864
|||| ||| || ||||| || | ||| ||||| || ||| |||||| |||||
Sbjct 83980 TGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATCCTCAAGCTGC 84039
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|||||| | ||||| || | ||||| || ||||||||||| || || || | || ||
Sbjct 84040 TTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCTTGGATCTTC 84099
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
| ||||||| | | | ||||| | || || || | ||| || || || || |||
Sbjct 84100 GACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCGGTA 84159
Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || ||||||||
Sbjct 84160 AGGGTCTTGACGAAAATCTGCAT 84182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448285994218440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |