Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq554 107 3e-19 >seq554 Length=787460 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 487699 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCTGCTAT 487757 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| |||||||||||||| ||||||||| | |||| Sbjct 487758 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 487798 Score = 93.3 bits (102), Expect = 7e-15 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| | ||| ||||||| || || || | ||||| Sbjct 508446 TGATCTACGAGGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCATTCGTGATG 508505 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| || |||||||| || || ||||||||||| || | ||| | ||||| | Sbjct 508506 CTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACTTCTCTTGATGTTGTCTACG 508565 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | ||||| || |||||||| | | || ||||| || ||||| Sbjct 508566 CGTTGAAGCGCCAAGGCCGCACCCTGTACGGTTTCGGTGGTTAA 508609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074350608797