Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq554 107 3e-19
>seq554
Length=787460
Score = 107 bits (118), Expect = 3e-19
Identities = 86/101 (85%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | || || |||||||| || ||||||||||| |||||
Sbjct 487699 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCTGCTAT 487757
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||| |||||||||||||| ||||||||| | ||||
Sbjct 487758 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 487798
Score = 93.3 bits (102), Expect = 7e-15
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| |||| ||| | ||| ||||||| || || || | |||||
Sbjct 508446 TGATCTACGAGGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCATTCGTGATG 508505
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || ||| || |||||||| || || ||||||||||| || | ||| | ||||| |
Sbjct 508506 CTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACTTCTCTTGATGTTGTCTACG 508565
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| ||||| || |||||||| | | || ||||| || |||||
Sbjct 508566 CGTTGAAGCGCCAAGGCCGCACCCTGTACGGTTTCGGTGGTTAA 508609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074350608797
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |