Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq572 147 3e-30 seq686 91.5 2e-13 >seq572 Length=609512 Score = 147 bits (162), Expect = 3e-30 Identities = 456/699 (65%), Gaps = 14/699 (2%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || |||| || ||||| | | ||| || ||| | || |||| ||||| Sbjct 17616 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 17675 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || ||||| || ||||| ||||| | || || || | || | ||||| || || Sbjct 17676 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 17735 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| | || | |||| | | | || | ||||| || || | ||| || Sbjct 17736 TGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATA 17795 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | | ||||| || ||||| || |||||||| | ||| | ||| ||||| ||| | Sbjct 17796 GCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAG 17855 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| ||||| | |||||| || | || ||||| || | |||||| ||| Sbjct 17856 ACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCA 17915 Query 63468 CTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 ||||||| ||| | | | | ||||| || || || ||||| || ||||| | || Sbjct 17916 GTGGCACGGATACGG-TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGC 17974 Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586 ||| || | ||||| ||||||||||| || || || |||||| | || || Sbjct 17975 GCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAA 18034 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 || ||||| ||| || || || || || || | || || || ||||| || Sbjct 18035 GCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGT 18094 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCT-GAGTCTAT-ATCCCA 63700 || | || || | || ||||| ||||| || ||| || ||| | |||| Sbjct 18095 GAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA 18154 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 |||| || ||||| |||||||| | ||||||||| ||||| || | |||||| Sbjct 18155 --GATG----CCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 18208 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63820 | | || | || ||| ||| |||||| || || || || || || | ||| || Sbjct 18209 ATCAAGCTTGAGCAGGTATGATCTTTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 18268 Query 63821 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 ||| || ||||| | ||| | |||| ||| | ||||| Sbjct 18269 GTCGCGGTCGTAGACAATGGCAGAGTCGAGCTCTTCCTT 18307 >seq686 Length=266282 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| ||||||||||| | || || |||||||| || || || Sbjct 148771 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 148830 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || |||||||| ||||| || || | || |||||| Sbjct 148831 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 148890 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 33480 || || || || || |||||||||| || | || | | || | | |||| Sbjct 148891 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 148950 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||||||| | ||||| || |||||||| Sbjct 148951 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 148979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939966025640