Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq572 147 3e-30
seq686 91.5 2e-13
>seq572
Length=609512
Score = 147 bits (162), Expect = 3e-30
Identities = 456/699 (65%), Gaps = 14/699 (2%)
Strand=Plus/Plus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
||||| || |||| || ||||| | | ||| || ||| | || |||| |||||
Sbjct 17616 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 17675
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
|| ||||| || ||||| ||||| | || || || | || | ||||| || ||
Sbjct 17676 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 17735
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
||||| | || | |||| | | | || | ||||| || || | ||| ||
Sbjct 17736 TGGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATA 17795
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | | ||||| || ||||| || |||||||| | ||| | ||| ||||| ||| |
Sbjct 17796 GCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAG 17855
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|| | | ||| ||||| | |||||| || | || ||||| || | |||||| |||
Sbjct 17856 ACACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCA 17915
Query 63468 CTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526
||||||| ||| | | | | ||||| || || || ||||| || ||||| | ||
Sbjct 17916 GTGGCACGGATACGG-TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGC 17974
Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586
||| || | ||||| ||||||||||| || || || |||||| | || ||
Sbjct 17975 GCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAA 18034
Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646
|| ||||| ||| || || || || || || | || || || ||||| ||
Sbjct 18035 GCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGT 18094
Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCT-GAGTCTAT-ATCCCA 63700
|| | || || | || ||||| ||||| || ||| || ||| | ||||
Sbjct 18095 GAAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCA 18154
Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760
|||| || ||||| |||||||| | ||||||||| ||||| || | ||||||
Sbjct 18155 --GATG----CCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 18208
Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63820
| | || | || ||| ||| |||||| || || || || || || | ||| ||
Sbjct 18209 ATCAAGCTTGAGCAGGTATGATCTTTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAA 18268
Query 63821 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859
||| || ||||| | ||| | |||| ||| | |||||
Sbjct 18269 GTCGCGGTCGTAGACAATGGCAGAGTCGAGCTCTTCCTT 18307
>seq686
Length=266282
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/209 (70%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || ||| ||| ||||||||||| | || || |||||||| || || ||
Sbjct 148771 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGA 148830
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| || |||||||| || |||||||| ||||| || || | || ||||||
Sbjct 148831 CCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAG 148890
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 33480
|| || || || || |||||||||| || | || | | || | | ||||
Sbjct 148891 ATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTG 148950
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509
|||||||| | ||||| || ||||||||
Sbjct 148951 ATCCACTTCAGGGCCCAGTCAGCCTTCTT 148979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622939966025640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |