Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq572 396 7e-105 seq686 100 7e-16 seq230 84.2 6e-11 >seq572 Length=609512 Score = 396 bits (438), Expect = 7e-105 Identities = 1075/1630 (66%), Gaps = 34/1630 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | | ||| ||||||| Sbjct 18097 TTCACCCACGCCTCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCA 18038 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || || || |||||||||| ||||| || |||| Sbjct 18037 TGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACC 17978 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || || | || ||||||| || || || |||||| | | || || || | | ||||| Sbjct 17977 TGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTC-ACCGTATCCGTGC 17919 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | || ||| ||||| || |||||| || | |||||||||||| Sbjct 17918 CACTGG-CTCCTATATTGCAGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTC 17860 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| ||| |||| ||||| | |||||||| |||||||| ||||| || || | Sbjct 17859 GTGTCTTTAACAACACTGCTCGCTACGTCGATCAGGGTGGCAACAAGCGTCCTGGCGCTT 17800 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | ||||| || || ||||| || ||||| | || ||||| | || | || || | Sbjct 17799 TCGCTATCTACCTTGAGCCCTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGA 17740 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | ||||| ||||| || ||| || || ||| | | || | Sbjct 17739 ACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATC 17680 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||| | || ||| | | | | | ||| | ||| | ||||| | || || Sbjct 17679 TGTTCATGAAGAGAGTCGAG--AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTG 17622 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || || | || | || || || | | || | ||||| ||||| || Sbjct 17621 CCCTGGCCTGGCTGACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCG 17562 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 ||||| |||| ||| ||||| || || |||||||| |||| ||||||| | || | Sbjct 17561 CGAGGGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGC 17502 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| ||||| || | |||| ||| | ||||| ||| | |||||||||| ||| Sbjct 17501 TCAGACCGAGACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAA 17442 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACA 364261 |||| || |||| || || || | |||| | ||||| || || ||||| ||||| ||| Sbjct 17441 CCAGAAGAACCTCGGAACTATCC-GCAGCTCCAACCTCTGCACTGAGATCATTGAGTACT 17383 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA- 364320 ||| ||||||||| || || || ||| | || || | || || || | || || Sbjct 17382 GCGCACCCGACGAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGTTG 17323 Query 364321 -----AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTT 364375 || |||||| | ||| |||| | ||| | || || || | | | | Sbjct 17322 ACTACAACGATGGTGTCTACGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTC 17263 Query 364376 GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCG 364430 |||| | ||||| | || || || | || || |||| || || || ||| Sbjct 17262 GCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAACAGC- 17204 Query 364431 TTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 || |||||||| ||||| |||||||| ||||| ||||| || ||||| | ||| | Sbjct 17203 ----AACATGCGTCACCGCCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCT 17148 Query 364491 GATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550 || ||| | || || || || || || |||| ||| || ||| ||||||| || Sbjct 17147 CGCCCTTCGCATGCCTTTCGAGTCTCCCGAGGCCCGTGATCTCAACAAGAAGATCTTCGA 17088 Query 364551 AACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTA 364610 || || || || || |||| || | | |||| || |||| | || Sbjct 17087 GACCATCTACCACGCTGCTCTGACCATGTCTGTTCAGCTGGCCAAGGAGGAGGGCACCTA 17028 Query 364611 CTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGT 364670 ||| || || ||||| |||||| | || ||||| | |||||| || | |||||||| Sbjct 17027 CTCCACGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGT 16968 Query 364671 CACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTA 364729 || ||| |||| || ||| | ||||| | || | | || | ||| |||| ||| Sbjct 16967 CAAGCCCTCTGACCTCTGGGATTGGGACTCTCTGAAGGAGCAGA-TCAAGGAGCACGGTG 16909 Query 364730 CTCGCAAC---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786 |||||| | |||||| || |||||||| || || || ||| | |||||| | | Sbjct 16908 TGCGCAACAGTTTGCTCGTT---GCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGG 16852 Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCG 364846 | ||||||||||||||||| || | || ||| | || ||| || |||||| ||| Sbjct 16851 GCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTACCAACGTCGTGTTCTTGCCG 16792 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 | || || | ||| ||||| | | | |||||||| |||| || |||||| Sbjct 16791 GCGAGTTCCAGGTTGTTAACCCCTGGTTGTTGAAGGATCTCGTCGACATGGGCCTGTGGT 16732 Query 364907 GTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGAT 364966 || |||||||||| ||||||||||| || |||||| | |||||||| || Sbjct 16731 CCGATGCCATGAAGAACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAACA 16672 Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026 |||| | || | ||| || | ||||| ||||| ||||| || ||| ||| || | Sbjct 16671 TTCCCGCTGAGGTCAAGGCTCTGTACAAGACCGTCTGGGAGATATCCCAGCGCACCGTTG 16612 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 || | ||||| ||||| || ||||| || ||| ||| |||||| ||||| | || Sbjct 16611 TTCAGATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCACA 16552 Query 365087 TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146 ||| | || || | |||| | || ||||| ||| ||| ||||| |||| Sbjct 16551 TGAAGGACCCGACAATGGGCAAGATCACCAGTATGCACTTCGCCGGCTGGAAGCTTGGTC 16492 Query 365147 TTAAGACAGG 365156 | ||||| || Sbjct 16491 TCAAGACGGG 16482 >seq686 Length=266282 Score = 100 bits (110), Expect = 7e-16 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA--ACGT-TCATTCGCGGAACGT 22494 || ||||| || ||||| ||||| ||||| | | |||| || || ||||| | ||| Sbjct 148979 AAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGT 148920 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || |||| ||||| | ||||| || || ||||| || || ||| | |||||| Sbjct 148919 CTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTT 148860 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | ||||| ||||| || || || || ||| | || ||| Sbjct 148859 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 148800 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643 || ||||||||||| ||||| ||||| || Sbjct 148799 GACGAGGGTCTTCACACCGACTTTGCCTG 148771 >seq230 Length=716270 Score = 84.2 bits (92), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA 111478 ||| || || ||||| || |||||||| || || || || || || |||||| | | Sbjct 621537 TGTCAAGATCTGGGACGGCAATGGATCGCGCGAGTTCCTCGACAGCGTCGGTCTTTCCCA 621596 Query 111479 CAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGA 111538 | ||||| ||||| ||||| || || ||||| || ||||||||||||||||| || || Sbjct 621597 CCGCGAAGTCGGTGACCTCGGTCCCGTGTACGGCTTCCAATGGCGCCACTTTGGCGCCGA 621656 Query 111539 CTAC 111542 ||| Sbjct 621657 GTAC 621660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303338086426478