Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq572 396 7e-105
seq686 100 7e-16
seq230 84.2 6e-11
>seq572
Length=609512
Score = 396 bits (438), Expect = 7e-105
Identities = 1075/1630 (66%), Gaps = 34/1630 (2%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| |||||| | || ||| | | ||| ||||| || | | | ||| |||||||
Sbjct 18097 TTCACCCACGCCTCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCA 18038
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || || || |||||||||| ||||| || ||||
Sbjct 18037 TGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACC 17978
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
|| || | || ||||||| || || || |||||| | | || || || | | |||||
Sbjct 17977 TGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTC-ACCGTATCCGTGC 17919
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | | || ||| ||||| || |||||| || | ||||||||||||
Sbjct 17918 CACTGG-CTCCTATATTGCAGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTC 17860
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
|||| ||| |||| ||||| | |||||||| |||||||| ||||| || || |
Sbjct 17859 GTGTCTTTAACAACACTGCTCGCTACGTCGATCAGGGTGGCAACAAGCGTCCTGGCGCTT 17800
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
| ||||| || || ||||| || ||||| | || ||||| | || | || || |
Sbjct 17799 TCGCTATCTACCTTGAGCCCTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGA 17740
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|| || || ||||| | ||||| ||||| || ||| || || ||| | | || |
Sbjct 17739 ACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATC 17680
Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATG 364022
|| |||||| | || ||| | | | | | ||| | ||| | ||||| | || ||
Sbjct 17679 TGTTCATGAAGAGAGTCGAG--AAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTG 17622
Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082
|| || || | || | || || || | | || | ||||| ||||| ||
Sbjct 17621 CCCTGGCCTGGCTGACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCG 17562
Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142
||||| |||| ||| ||||| || || |||||||| |||| ||||||| | || |
Sbjct 17561 CGAGGGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGC 17502
Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202
|||| ||||| || | |||| ||| | ||||| ||| | |||||||||| |||
Sbjct 17501 TCAGACCGAGACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAA 17442
Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACA 364261
|||| || |||| || || || | |||| | ||||| || || ||||| ||||| |||
Sbjct 17441 CCAGAAGAACCTCGGAACTATCC-GCAGCTCCAACCTCTGCACTGAGATCATTGAGTACT 17383
Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA- 364320
||| ||||||||| || || || ||| | || || | || || || | || ||
Sbjct 17382 GCGCACCCGACGAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGTTG 17323
Query 364321 -----AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTT 364375
|| |||||| | ||| |||| | ||| | || || || | | | |
Sbjct 17322 ACTACAACGATGGTGTCTACGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTC 17263
Query 364376 GCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCG 364430
|||| | ||||| | || || || | || || |||| || || || |||
Sbjct 17262 GCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAACAGC- 17204
Query 364431 TTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490
|| |||||||| ||||| |||||||| ||||| ||||| || ||||| | ||| |
Sbjct 17203 ----AACATGCGTCACCGCCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCT 17148
Query 364491 GATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGA 364550
|| ||| | || || || || || || |||| ||| || ||| ||||||| ||
Sbjct 17147 CGCCCTTCGCATGCCTTTCGAGTCTCCCGAGGCCCGTGATCTCAACAAGAAGATCTTCGA 17088
Query 364551 AACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTA 364610
|| || || || || |||| || | | |||| || |||| | ||
Sbjct 17087 GACCATCTACCACGCTGCTCTGACCATGTCTGTTCAGCTGGCCAAGGAGGAGGGCACCTA 17028
Query 364611 CTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGT 364670
||| || || ||||| |||||| | || ||||| | |||||| || | ||||||||
Sbjct 17027 CTCCACGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGT 16968
Query 364671 CACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTA 364729
|| ||| |||| || ||| | ||||| | || | | || | ||| |||| |||
Sbjct 16967 CAAGCCCTCTGACCTCTGGGATTGGGACTCTCTGAAGGAGCAGA-TCAAGGAGCACGGTG 16909
Query 364730 CTCGCAAC---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786
|||||| | |||||| || |||||||| || || || ||| | |||||| | |
Sbjct 16908 TGCGCAACAGTTTGCTCGTT---GCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGG 16852
Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCG 364846
| ||||||||||||||||| || | || ||| | || ||| || |||||| |||
Sbjct 16851 GCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTACCAACGTCGTGTTCTTGCCG 16792
Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906
| || || | ||| ||||| | | | |||||||| |||| || ||||||
Sbjct 16791 GCGAGTTCCAGGTTGTTAACCCCTGGTTGTTGAAGGATCTCGTCGACATGGGCCTGTGGT 16732
Query 364907 GTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGAT 364966
|| |||||||||| ||||||||||| || |||||| | |||||||| ||
Sbjct 16731 CCGATGCCATGAAGAACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAACA 16672
Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026
|||| | || | ||| || | ||||| ||||| ||||| || ||| ||| || |
Sbjct 16671 TTCCCGCTGAGGTCAAGGCTCTGTACAAGACCGTCTGGGAGATATCCCAGCGCACCGTTG 16612
Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086
|| | ||||| ||||| || ||||| || ||| ||| |||||| ||||| | ||
Sbjct 16611 TTCAGATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTTAACATCCACA 16552
Query 365087 TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146
||| | || || | |||| | || ||||| ||| ||| ||||| ||||
Sbjct 16551 TGAAGGACCCGACAATGGGCAAGATCACCAGTATGCACTTCGCCGGCTGGAAGCTTGGTC 16492
Query 365147 TTAAGACAGG 365156
| ||||| ||
Sbjct 16491 TCAAGACGGG 16482
>seq686
Length=266282
Score = 100 bits (110), Expect = 7e-16
Identities = 149/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA--ACGT-TCATTCGCGGAACGT 22494
|| ||||| || ||||| ||||| ||||| | | |||| || || ||||| | |||
Sbjct 148979 AAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGT 148920
Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554
|| |||| ||||| | ||||| || || ||||| || || ||| | ||||||
Sbjct 148919 CTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTT 148860
Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614
||||| || || |||| | ||||| ||||| || || || || ||| | || |||
Sbjct 148859 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 148800
Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643
|| ||||||||||| ||||| ||||| ||
Sbjct 148799 GACGAGGGTCTTCACACCGACTTTGCCTG 148771
>seq230
Length=716270
Score = 84.2 bits (92), Expect = 6e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA 111478
||| || || ||||| || |||||||| || || || || || || |||||| | |
Sbjct 621537 TGTCAAGATCTGGGACGGCAATGGATCGCGCGAGTTCCTCGACAGCGTCGGTCTTTCCCA 621596
Query 111479 CAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGA 111538
| ||||| ||||| ||||| || || ||||| || ||||||||||||||||| || ||
Sbjct 621597 CCGCGAAGTCGGTGACCTCGGTCCCGTGTACGGCTTCCAATGGCGCCACTTTGGCGCCGA 621656
Query 111539 CTAC 111542
|||
Sbjct 621657 GTAC 621660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303338086426478
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |