Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq356 131 2e-25
seq686 122 8e-23
seq477 109 5e-19
seq572 107 2e-18
seq863 89.7 5e-13
>seq356
Length=254992
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || | ||| | || |||||||| |||||||||||||| |
Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| |||||||| || ||| |||| || ||||||||||| |||||
Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || ||| ||| ||||| | || | || || | || || |
Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 84135
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| |||| || || ||||| || || || ||||||||||||||
Sbjct 84136 TCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 125 bits (138), Expect = 7e-24
Identities = 158/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| || || || || | || |||||||| ||||||||||| ||| |
Sbjct 84184 CCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 84243
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| || |||||||| || |||| |||||||||||||| || |||
Sbjct 84244 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 84303
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || || ||| ||||| | || | |||||| | |||||||
Sbjct 84304 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 84363
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|||| ||| | ||| || || || || || || ||||
Sbjct 84364 TCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 84400
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || || || | ||| |||||||| ||||||||||| |||
Sbjct 84470 CCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 84529
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| ||||||||||| ||| | || | ||||||||| || || |||
Sbjct 84530 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 84589
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||| | | || | ||||||| ||||||||
Sbjct 84590 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACC 84649
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| || | ||| || |||||
Sbjct 84650 TCGAGAGTGATGGTCTTGCCGGT 84672
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || || | ||| || || | ||| | ||| || ||||| || || ||||| |||||
Sbjct 83727 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCT 83786
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||||| || || | |||||| || ||| |||| | |||||||||||| |||||
Sbjct 83787 CAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 83846
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || ||||| ||| || ||| | | || | || || | |||||||
Sbjct 83847 GATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGAC 83906
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| || || || || || || || ||||| ||||||||
Sbjct 83907 TTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
>seq686
Length=266282
Score = 122 bits (134), Expect = 8e-23
Identities = 335/502 (67%), Gaps = 21/502 (4%)
Strand=Plus/Minus
Query 46096 CGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC-AGCAGCACCGCGACTTTCGCCGA 46154
|||||||| | |||||||| |||||||||||| | | || | | | | |||||| |
Sbjct 148982 CGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAG-AACTCCTCCTTCGCCCA 148924
Query 46155 GCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCAT 46214
|||| |||| |||||||| ||| ||||| |||| || || ||||||| ||||
Sbjct 148923 GCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCAT 148864
Query 46215 CTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATAT 46273
||||| |||| || | || | ||||||| || ||||| || ||||||||| || |
Sbjct 148863 CTTTTGGCTCAAGAAGCGTGGTC-TCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCT 148805
Query 46274 CGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACG 46333
| || |||||||| || || || |||||||| || |||| | |||| |||
Sbjct 148804 CCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGT-----ACTC----TCACC 148754
Query 46334 ACAAGCTTGCGCCCGACA--CCGTGC--TGAG--CATGTTCAAGGAGGCGGTGGCCATTG 46387
||||| ||| ||| | | | |||| ||| || || || || ||||
Sbjct 148753 TCAAGCACCGCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTG 148694
Query 46388 AGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAA 46447
|| ||||||| | || | || |||||| || || || ||||||||| | | | |
Sbjct 148693 AGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGA 148634
Query 46448 TGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGC 46507
|| | ||||| ||||| || || ||||| || || || ||| | | |||
Sbjct 148633 TGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAG- 148575
Query 46508 ATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACT 46566
| | || | | ||| || || || || ||| | ||||||||||| | ||||| ||
Sbjct 148574 GTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACC 148515
Query 46567 AATTTTTTCGAAAAGCGCGTCG 46588
|| || || || ||||| ||||
Sbjct 148514 AACTTCTTTGAGAAGCGTGTCG 148493
>seq477
Length=261965
Score = 109 bits (120), Expect = 5e-19
Identities = 138/189 (73%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | |||||| ||||| ||||||||||| ||| |||
Sbjct 234211 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 234270
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | ||||||||||| || ||||| || || ||||| ||| || ||||| | |
Sbjct 234271 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 234330
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || |||| |||||||| || | ||||| ||| ||||| || || || || ||||
Sbjct 234331 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 234390
Query 131225 AAATCTGCA 131233
|| |||||
Sbjct 234391 AA--CTGCA 234397
>seq572
Length=609512
Score = 107 bits (118), Expect = 2e-18
Identities = 702/1115 (63%), Gaps = 39/1115 (3%)
Strand=Plus/Plus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
|| || ||||| ||||||||||| | |||||||| || | ||| || ||| | ||
Sbjct 16773 TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGC 16832
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || ||||||| ||||||| ||| || | || | || || |||||| || ||
Sbjct 16833 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 16892
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| || ||||||| ||||||| |||||| | ||||| || | ||||||||||
Sbjct 16893 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAG 16952
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| || ||| | || | ||||||||||||||| | || |||| | | ||| |
Sbjct 16953 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAG 17012
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT--CCAGAG 145355
|| | | | ||| ||||| ||||| |||| ||| | | |||||
Sbjct 17013 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCT--GAACAGACATGGTCAGAG 17070
Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCA-TCGCTTCATCGCTCTCG 145414
| || || || |||||| || | | ||||||| | || || || ||||
Sbjct 17071 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG-ATCACGGGCCTCGGGAGACTCG 17129
Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474
| |||||||| || | |||||||| || || ||||| | || | || |||||
Sbjct 17130 AAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAATGGGG 17189
Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGGTCGATA 145531
|| || ||||||||| | | || |||| | || || | || || ||
Sbjct 17190 CGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGGTAGTGGTTGACATCAATG 17246
Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591
|| || |||||||| || || || |||| || | | | | ||| | ||||| |
Sbjct 17247 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCGTAG 17306
Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651
| | |||| | | || || | | || | || ||||| || || || ||
Sbjct 17307 ACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAAGGGAAGCCAAGTTGCAGACAGCG 17366
Query 145652 GTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTT 145711
||| |||| ||| ||| | | |||||| | ||| | ||| | ||| |||
Sbjct 17367 ACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTT 17426
Query 145712 CCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCG 145771
|| || || | ||| || || || | |||| || |||||||| |||||| | || |
Sbjct 17427 CCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTG 17486
Query 145772 CCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828
|||||||| ||| | ||| | ||| | | | || | ||| || | ||
Sbjct 17487 CCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGC---TTCTGGGC-----CTTGA 17538
Query 145829 TGCTGGTAGCG------GCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882
|| | | ||| |||||| ||||| ||| ||| | |||| ||| |
Sbjct 17539 TGGT-CTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCG 17597
Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942
|||||||| || | |||||| || |||| ||||| ||||| || | ||| || ||||
Sbjct 17598 CCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTC 17657
Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCT 146002
| ||| | || ||| |||| ||| || | ||| || ||| | | ||| || ||
Sbjct 17658 TTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCA 17717
Query 146003 TTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGATGTCCGCG 146059
| ||||| ||||| ||| || ||| | | | || | | ||| ||| |||
Sbjct 17718 CGGACCTCCTC-CTTGCCATGGTTCTTGC-GCAAGTCCATGAACTCGA-AGACGTCGGCG 17774
Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116
||||| || |||| |||| |||| || || || ||||||||||| || |||
Sbjct 17775 TGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACG 17834
Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151
| || | ||||||||||||| || | ||||||
Sbjct 17835 TAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGG 17869
>seq863
Length=517823
Score = 89.7 bits (98), Expect = 5e-13
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129
|||||| |||||| |||||||| || ||| |||| | |||||||||||| || |||||
Sbjct 7423 GGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGAT 7364
Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189
|| || ||||| ||| || ||||| | || | || |||| ||||| | ||
Sbjct 7363 GCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTC 7304
Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
| ||| | || || || || || || || ||||| ||||||||||
Sbjct 7303 AAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGA 7257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472007318751360
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