Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq356 131 2e-25 seq686 122 8e-23 seq477 109 5e-19 seq572 107 2e-18 seq863 89.7 5e-13 >seq356 Length=254992 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | ||| | || |||||||| |||||||||||||| | Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| ||| ||||| | || | || || | || || | Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 84135 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || ||||| || || || |||||||||||||| Sbjct 84136 TCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || || || | || |||||||| ||||||||||| ||| | Sbjct 84184 CCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 84243 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || |||||||| || |||| |||||||||||||| || ||| Sbjct 84244 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 84303 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || ||| ||||| | || | |||||| | ||||||| Sbjct 84304 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 84363 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | ||| || || || || || || |||| Sbjct 84364 TCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 84400 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||| |||||||| ||||||||||| ||| Sbjct 84470 CCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 84529 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| | || | ||||||||| || || ||| Sbjct 84530 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 84589 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||||||| |||||||| Sbjct 84590 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACC 84649 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| || | ||| || ||||| Sbjct 84650 TCGAGAGTGATGGTCTTGCCGGT 84672 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | ||| | ||| || ||||| || || ||||| ||||| Sbjct 83727 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCT 83786 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || | |||||| || ||| |||| | |||||||||||| ||||| Sbjct 83787 CAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 83846 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | || | || || | ||||||| Sbjct 83847 GATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGAC 83906 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || || || || ||||| |||||||| Sbjct 83907 TTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954 >seq686 Length=266282 Score = 122 bits (134), Expect = 8e-23 Identities = 335/502 (67%), Gaps = 21/502 (4%) Strand=Plus/Minus Query 46096 CGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC-AGCAGCACCGCGACTTTCGCCGA 46154 |||||||| | |||||||| |||||||||||| | | || | | | | |||||| | Sbjct 148982 CGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAG-AACTCCTCCTTCGCCCA 148924 Query 46155 GCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCAT 46214 |||| |||| |||||||| ||| ||||| |||| || || ||||||| |||| Sbjct 148923 GCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCAT 148864 Query 46215 CTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATAT 46273 ||||| |||| || | || | ||||||| || ||||| || ||||||||| || | Sbjct 148863 CTTTTGGCTCAAGAAGCGTGGTC-TCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCT 148805 Query 46274 CGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACG 46333 | || |||||||| || || || |||||||| || |||| | |||| ||| Sbjct 148804 CCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGT-----ACTC----TCACC 148754 Query 46334 ACAAGCTTGCGCCCGACA--CCGTGC--TGAG--CATGTTCAAGGAGGCGGTGGCCATTG 46387 ||||| ||| ||| | | | |||| ||| || || || || |||| Sbjct 148753 TCAAGCACCGCCCCAACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTG 148694 Query 46388 AGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAA 46447 || ||||||| | || | || |||||| || || || ||||||||| | | | | Sbjct 148693 AGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGA 148634 Query 46448 TGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGC 46507 || | ||||| ||||| || || ||||| || || || ||| | | ||| Sbjct 148633 TGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAG- 148575 Query 46508 ATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACT 46566 | | || | | ||| || || || || ||| | ||||||||||| | ||||| || Sbjct 148574 GTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACC 148515 Query 46567 AATTTTTTCGAAAAGCGCGTCG 46588 || || || || ||||| |||| Sbjct 148514 AACTTCTTTGAGAAGCGTGTCG 148493 >seq477 Length=261965 Score = 109 bits (120), Expect = 5e-19 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| ||| ||| Sbjct 234211 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 234270 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| || || ||||| ||| || ||||| | | Sbjct 234271 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 234330 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||||| ||| ||||| || || || || |||| Sbjct 234331 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 234390 Query 131225 AAATCTGCA 131233 || ||||| Sbjct 234391 AA--CTGCA 234397 >seq572 Length=609512 Score = 107 bits (118), Expect = 2e-18 Identities = 702/1115 (63%), Gaps = 39/1115 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || || ||||| ||||||||||| | |||||||| || | ||| || ||| | || Sbjct 16773 TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGC 16832 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||||| ||| || | || | || || |||||| || || Sbjct 16833 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 16892 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||||| ||||||| |||||| | ||||| || | |||||||||| Sbjct 16893 AGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAG 16952 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| | || | ||||||||||||||| | || |||| | | ||| | Sbjct 16953 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAG 17012 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT--CCAGAG 145355 || | | | ||| ||||| ||||| |||| ||| | | ||||| Sbjct 17013 CCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCT--GAACAGACATGGTCAGAG 17070 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCA-TCGCTTCATCGCTCTCG 145414 | || || || |||||| || | | ||||||| | || || || |||| Sbjct 17071 CAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG-ATCACGGGCCTCGGGAGACTCG 17129 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 | |||||||| || | |||||||| || || ||||| | || | || ||||| Sbjct 17130 AAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAATGGGG 17189 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGGTCGATA 145531 || || ||||||||| | | || |||| | || || | || || || Sbjct 17190 CGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGGTAGTGGTTGACATCAATG 17246 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591 || || |||||||| || || || |||| || | | | | ||| | ||||| | Sbjct 17247 ATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCGTAG 17306 Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651 | | |||| | | || || | | || | || ||||| || || || || Sbjct 17307 ACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAAGGGAAGCCAAGTTGCAGACAGCG 17366 Query 145652 GTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTT 145711 ||| |||| ||| ||| | | |||||| | ||| | ||| | ||| ||| Sbjct 17367 ACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTT 17426 Query 145712 CCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCG 145771 || || || | ||| || || || | |||| || |||||||| |||||| | || | Sbjct 17427 CCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTG 17486 Query 145772 CCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 |||||||| ||| | ||| | ||| | | | || | ||| || | || Sbjct 17487 CCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGC---TTCTGGGC-----CTTGA 17538 Query 145829 TGCTGGTAGCG------GCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 || | | ||| |||||| ||||| ||| ||| | |||| ||| | Sbjct 17539 TGGT-CTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCG 17597 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 |||||||| || | |||||| || |||| ||||| ||||| || | ||| || |||| Sbjct 17598 CCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTC 17657 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCT 146002 | ||| | || ||| |||| ||| || | ||| || ||| | | ||| || || Sbjct 17658 TTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCA 17717 Query 146003 TTGCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGATGTCCGCG 146059 | ||||| ||||| ||| || ||| | | | || | | ||| ||| ||| Sbjct 17718 CGGACCTCCTC-CTTGCCATGGTTCTTGC-GCAAGTCCATGAACTCGA-AGACGTCGGCG 17774 Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116 ||||| || |||| |||| |||| || || || ||||||||||| || ||| Sbjct 17775 TGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACG 17834 Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 | || | ||||||||||||| || | |||||| Sbjct 17835 TAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGG 17869 >seq863 Length=517823 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 |||||| |||||| |||||||| || ||| |||| | |||||||||||| || ||||| Sbjct 7423 GGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGAT 7364 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 || || ||||| ||| || ||||| | || | || |||| ||||| | || Sbjct 7363 GCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTC 7304 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 | ||| | || || || || || || || ||||| |||||||||| Sbjct 7303 AAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGA 7257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007318751360