Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq686 114 1e-20
>seq686
Length=266282
Score = 114 bits (126), Expect = 1e-20
Identities = 198/287 (69%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
||||| || ||||| | || || || | ||||| |||| |||||||| || |||
Sbjct 149094 ATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGG 149153
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| |||||||| || | ||| || | || ||| || || || || | ||| |||||
Sbjct 149154 AAGCCGTAGAAGCAGCGAGCCTCGGGGACCTGGACCTCGCCGGAGAAGCGCTCGACGAGG 149213
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|| || ||||| ||||| || ||||| || || || || | || || || || |
Sbjct 149214 TTCTCGTTGACGATACCGTCCGATGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTAC 149273
Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
||||||||||| || | | || | ||| ||| ||||| || || ||||| | ||
Sbjct 149274 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCC 149333
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
||| | ||||| || || || || || || |||||||| | ||| ||
Sbjct 149334 TCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 149380
Score = 95.1 bits (104), Expect = 1e-14
Identities = 155/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141
||||| | ||| ||||||||||| || | ||| ||||| || || || | ||| |||
Sbjct 148761 GTACAAGAGGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGA 148820
Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201
||| || | ||| || | || || || |||||||||||||| || || |||||| |||
Sbjct 148821 GAAGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACC 148880
Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261
|| || ||||| || || || ||||| || || | ||| | ||| || | |||
Sbjct 148881 GCTGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAA---GGAGGA 148937
Query 93262 ATT---ACTGCTGATCCATTTTAAAGCCCAATCGGCtttttt 93300
|| | ||||||||| || | ||||| || || || ||
Sbjct 148938 GTTCTCATCGCTGATCCACTTCAGGGCCCAGTCAGCCTTCTT 148979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556854333453960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |