Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq356 116 3e-21 seq477 95.1 1e-14 seq863 93.3 4e-14 >seq356 Length=254992 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || ||||||| || || || || |||||||| | || | | || Sbjct 84672 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATCGATAACGTGAAGTCC 84613 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || |||||||| || ||||| || || || ||||| Sbjct 84612 AAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 84553 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||||| ||||||| ||||||||||| || || || ||| | || Sbjct 84552 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 84493 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| | || | || || ||| Sbjct 84492 TTGGTTCTCCGCCTTCGTGGTGGT 84469 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || ||| | || || || || ||| | | Sbjct 84182 ATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACGATTACGCTCGAGGTTGAATCTTCA 84123 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||| |||||||||||||| ||||| || Sbjct 84122 GACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCCGACCAG 84063 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||| | |||||| |||||| | || ||||||||| Sbjct 84062 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCGGATTACAAC 84003 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | ||| | || |||| |||| || ||| Sbjct 84002 ATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGCCTGCGTGGTGGT 83955 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || || | | ||||| | ||| || |||| Sbjct 84386 ACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGATACTATCGACAATGTCAAGTCG 84327 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || |||||||| || || || || || || ||| | || ||||| ||||| Sbjct 84326 AAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAG 84267 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| ||||||| | ||||| ||||||||||| || || ||||| | || Sbjct 84266 CAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACTCTCCAC 84207 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| | || | ||||| ||| Sbjct 84206 TTGGTTCTCCGTCTTCGCGGTGGT 84183 >seq477 Length=261965 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || | || ||||| || || || |||| || | Sbjct 234392 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGAT 234333 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| || || || || || || || || Sbjct 234332 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCT 234273 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 234272 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 234213 >seq863 Length=517823 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | || Sbjct 7259 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 7318 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || ||||| || Sbjct 7319 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 7378 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || ||||| || || ||||| || ||| | ||||| ||||||| ||||| Sbjct 7379 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCC 7429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723247760885