Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq627 109 1e-18 seq686 105 1e-17 >seq627 Length=279831 Score = 109 bits (120), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| || || || |||| |||||||| || ||| Sbjct 266744 GGTGAGGATCTTTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATTCTTCTCAAC 266685 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| | ||||||||||| | || || ||||| ||||||||| || | Sbjct 266684 CAGACCCACCTCCGCCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 266625 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 266624 GGAAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 266566 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 266565 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 266524 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 |||||||| || || ||||| || || || ||| ||||| | ||| | | || || Sbjct 265340 CACTCTCGTATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCTGCCTGC 265281 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||||| ||| ||| ||||||| || ||||||||||||||||| || ||||| || Sbjct 265280 TCT-TGGCAACGCCCCCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGTGA 265222 >seq686 Length=266282 Score = 105 bits (116), Expect = 1e-17 Identities = 264/397 (66%), Gaps = 7/397 (2%) Strand=Plus/Plus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| || ||||| || | |||||| | || ||||| |||| Sbjct 148483 TGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCC 148542 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| | | ||||| |||| | |||||| || || | || | Sbjct 148543 ATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAGG 148602 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 ||||| || || ||||| | ||||| ||||| | ||||||||||| | | | Sbjct 148603 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 148662 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781 || || | |||||| || ||| |||| || | || || || | | || || Sbjct 148663 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 148722 Query 251782 T---TCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAAC 251838 | | ||| ||| | || || || || | ||||||| ||| | |||| Sbjct 148723 TCAATGACC--TGCTTGTTGGGGC-GGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAG 148779 Query 251839 TGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATC 251898 | ||| ||||||||||| || ||||| ||||||||| | ||| |||||||| Sbjct 148780 TCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATG 148839 Query 251899 ACCCCACGGTTCCTGAGCCAGAAGATTG-CGCAAAAG 251934 | ||||| ||| ||||||| ||||| | ||||||| Sbjct 148840 AGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAG 148876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027824565851289