Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq627 109 1e-18
seq686 105 1e-17
>seq627
Length=279831
Score = 109 bits (120), Expect = 1e-18
Identities = 159/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || |||| ||||| || || || |||| |||||||| || |||
Sbjct 266744 GGTGAGGATCTTTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATTCTTCTCAAC 266685
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| |||| | ||||||||||| | || || ||||| ||||||||| || |
Sbjct 266684 CAGACCCACCTCCGCCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 266625
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 266624 GGAAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 266566
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 266565 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 266524
Score = 84.2 bits (92), Expect = 4e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
|||||||| || || ||||| || || || ||| ||||| | ||| | | || ||
Sbjct 265340 CACTCTCGTATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCTGCCTGC 265281
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||| ||||||| ||| ||| ||||||| || ||||||||||||||||| || ||||| ||
Sbjct 265280 TCT-TGGCAACGCCCCCACTTGATCGTCCTTGACGAGCCTACCAACTACCTTGACCGTGA 265222
>seq686
Length=266282
Score = 105 bits (116), Expect = 1e-17
Identities = 264/397 (66%), Gaps = 7/397 (2%)
Strand=Plus/Plus
Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601
|| || |||| ||||| || ||||| || | |||||| | || ||||| ||||
Sbjct 148483 TGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCC 148542
Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661
||||||||||||||||| | | ||||| |||| | |||||| || || | || |
Sbjct 148543 ATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAGG 148602
Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721
||||| || || ||||| | ||||| ||||| | ||||||||||| | | |
Sbjct 148603 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 148662
Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781
|| || | |||||| || ||| |||| || | || || || | | || ||
Sbjct 148663 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 148722
Query 251782 T---TCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAAC 251838
| | ||| ||| | || || || || | ||||||| ||| | ||||
Sbjct 148723 TCAATGACC--TGCTTGTTGGGGC-GGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAG 148779
Query 251839 TGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATC 251898
| ||| ||||||||||| || ||||| ||||||||| | ||| ||||||||
Sbjct 148780 TCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATG 148839
Query 251899 ACCCCACGGTTCCTGAGCCAGAAGATTG-CGCAAAAG 251934
| ||||| ||| ||||||| ||||| | |||||||
Sbjct 148840 AGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAG 148876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027824565851289
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |