Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq356 152 9e-32 seq863 134 3e-26 seq627 129 1e-24 seq890 114 2e-20 seq526 87.8 3e-12 seq757 86.0 1e-11 seq572 84.2 4e-11 >seq356 Length=254992 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | || || || ||||| || || ||||| ||||| || Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | | || |||||||| ||| Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||| ||||| | ||||||| || |||||||||| ||||| || Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 84135 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || |||||||||||||| |||||||| Sbjct 84136 TCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| || || || || || || ||||| || || ||| Sbjct 83728 CCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTC 83787 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| |||||||| || ||||| || || | || |||||||| || Sbjct 83788 AAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 83847 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| ||| || || ||||| | ||| || ||| Sbjct 83848 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACT 83907 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || || ||||||||||| |||||||| Sbjct 83908 TCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954 >seq863 Length=517823 Score = 134 bits (148), Expect = 3e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 |||||| || | || || || | |||||| |||||||| || || | || |||||||| Sbjct 7429 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGG 7370 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 || ||||| |||||||| || ||||| | |||||| ||||||||||| | || || Sbjct 7369 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTC 7310 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || || | |||||| || || ||||| |||||||||||||| |||||||| || Sbjct 7309 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 7256 >seq627 Length=279831 Score = 129 bits (142), Expect = 1e-24 Identities = 389/589 (66%), Gaps = 14/589 (2%) Strand=Plus/Plus Query 225415 CTCGTAATGAACAAT-TGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAA 225473 |||||| || || || ||| | ||| || ||| |||||||||||||||||||| || | Sbjct 266169 CTCGTAGTGGACGATGTGCTG-GCAGACGTTGTCGAGGAAGCCAGAGTCGTGGGAGACGA 266227 Query 225474 TGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTGCGTGAT-GAGCCATGCCACGTTGCT 225531 ||||||| | || | | || | | ||||| || | |||||| ||||| | Sbjct 266228 TGATGGAAGTGCAGG---GGGAGTTCAT-GAGGTA-GTCCTCGAGCCACTTGACGTTCTT 266282 Query 225532 GACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGC 225591 ||||||| |||||| ||||| ||||| ||||||||||| || | | || || ||| Sbjct 266283 CACGTCCAAGTGGTTGGTAGGCTCGTCGAGAAGCAGGATATCGGGGGCCTCGAAGACGGC 266342 Query 225592 GCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTGAAACAGAGTG 225651 || |||| || |||||| ||||| || || ||||||| ||| | | | Sbjct 266343 ACGGCAAAGAGCCAACTTCATCTTCCAACCACCAGACAGGGCAGAGATCTCACCCTTGAC 266402 Query 225652 CTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGT---CTGGATAATGCGCTCGGGAGAGCT 225708 | | || ||| |||||| |||| |||| | || || | | || ||||| || Sbjct 266403 CATGGCCTCGGTGAAGCCGAACTCGTTGAGCTTGGCCTCGACA-TCAGCCTGGGAGGTCT 266461 Query 225709 -GCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGTCATGTCCGAGACAG 225767 | | ||||| || | | | | | ||| |||||| || | | ||| Sbjct 266462 CGACACCGGCATCGGCAAGCTTCTTCATGGTCCACTCAATGGTGGTCATCTCAGTGTCAG 266521 Query 225768 ACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCT 225827 | ||| | |||||| || ||| | || ||| || || || | |||||| |||| Sbjct 266522 CAGAGTCCAGGTCGTGCTCGACGAAGACGGTCTTGACCTCGGACTGCTTGGGGAAACCCT 266581 Query 225828 CCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGA 225887 | | ||| | || || ||||| | || ||| ||| || | |||||||||||| Sbjct 266582 CGACCTGCTCGTTGTTGATGGCACGCATGAGAGTAGACTTTCCGGAACCGTTGGGACCGC 266641 Query 225888 TGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGC 225947 || ||||| | | || ||||||| | |||| | || ||| || || |||||| Sbjct 266642 AAAGACCGTAGCGCTGGCCACGCTTGAGGCGGAGGTGGGTCTGGTTGAGAAGAATCTTGG 266701 Query 225948 CACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 |||| |||||||||||||| ||| | ||| || |||||||||||||| Sbjct 266702 CACCGTAGGCAAGGGAGAAGGTGCAGTTGCAAAGATCCTCACCCTCCTC 266750 >seq890 Length=99485 Score = 114 bits (126), Expect = 2e-20 Identities = 217/316 (69%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || ||||| || ||||| ||| ||||| || || || ||||||| ||||| | | Sbjct 13807 CCAGTGTGAACATCCTCAGAGAAACCAATTTCGGCCGTTCCGCCGACCTCGACAAGAGAC 13866 Query 59357 TCTCGGCGGTAGACTGCGCATGTC--CCGACGCACACGGCGCCGCCAAAGGTGTCGCGAG 59414 || || ||||||| | |||| | || ||||| | | | | || | ||| ||| Sbjct 13867 TCACGACGGTAGA--GAGCATTGCTACCAACGCAGATTGAGGCTCCCCATCTGTTACGAT 13924 Query 59415 AAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAG 59474 ||||| | || |||||||||||||||||| || || ||| | |||||||||||| Sbjct 13925 TGACCTGCACGACACGGTAGAACAGTTCCTGAGTGGCACCCGCACCCTGCTCAACCCAAG 13984 Query 59475 TCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534 | ||||| || |||| |||| ||| |||| |||| || |||| |||| Sbjct 13985 TTTGGTCATCAGTGACGCGGAAGTACTGAGGGCTCTGAACAAGGGCCGTCTTATCGTC-- 14042 Query 59535 GGGAAAAGTAGGG---CATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCAT 59591 | |||| ||| | |||||| | |||||||||| || |||||||| |||| Sbjct 14043 -GCCCAAGTGCTCAACCATCAATTCCTTAACAAAGTCAGGGCGTGGGCAGAAGTCGGCAT 14101 Query 59592 CGAAGATGGCAAAGAA 59607 |||| ||||||||||| Sbjct 14102 CGAAAATGGCAAAGAA 14117 >seq526 Length=380746 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 195992 TGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGTGGGAA 196051 |||||||||||||||||||||||||||||| ||| | | | ||| ||| |||||| Sbjct 87545 TGGGTCGTCTTTGACGAAATCCACTACATGAGAGACAAGACTAGAGGTGTCGTTTGGGAA 87486 Query 196052 GAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTGTTCCC 196111 || | | | || || | || |||| |||||| ||||| ||||||| || ||||| Sbjct 87485 GAGACCATCATTCTTCTTCCTGATAAGGTCCGCTACGTCTTCCTGTCCGCCACCATTCCC 87426 Query 196112 AACGCC 196117 |||||| Sbjct 87425 AACGCC 87420 >seq757 Length=767470 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| || | |||| || |||| |||||| ||||||||||||| | ||||| ||| Sbjct 151278 GAGCCAGGCGATGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAACAACAGGACGTC 151337 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || | | || || || || | | || || |||||| ||||| || ||||||||||| Sbjct 151338 GGCGCCCTTCAGCATAGCACGAGCCAAAGCCAACTTCATCTTCCATCCTCCGGACAGGGA 151397 Query 225634 GCCGA 225638 ||||| Sbjct 151398 GCCGA 151402 >seq572 Length=609512 Score = 84.2 bits (92), Expect = 4e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 31427 GTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCAT 31486 ||| || |||| ||||| | | |||||| | |||| || ||| || |||||||| Sbjct 17078 GTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCTCGGGAGACTCGAAAGGCAT 17137 Query 31487 GCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCG 31546 ||| || || ||| | || ||||||||||||||| | ||||| ||||| | || Sbjct 17138 GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGGTGACG 17197 Query 31547 CATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTGT 31602 |||||| || | |||||||||| | |||| |||| |||||| |||||| Sbjct 17198 CATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATGATCTTGT 17253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921611697659880