Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq356 152 9e-32
seq863 134 3e-26
seq627 129 1e-24
seq890 114 2e-20
seq526 87.8 3e-12
seq757 86.0 1e-11
seq572 84.2 4e-11
>seq356
Length=254992
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| || | || || || ||||| || || ||||| ||||| ||
Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || | | || |||||||| |||
Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||| ||||| | ||||||| || |||||||||| ||||| ||
Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 84135
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || || || || |||||||||||||| ||||||||
Sbjct 84136 TCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||| || || || || || || ||||| || || |||
Sbjct 83728 CCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTC 83787
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | |||||||| |||||||| || ||||| || || | || |||||||| ||
Sbjct 83788 AAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 83847
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||| ||| || || ||||| | ||| || |||
Sbjct 83848 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACT 83907
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || ||||| || || ||||||||||| ||||||||
Sbjct 83908 TCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
>seq863
Length=517823
Score = 134 bits (148), Expect = 3e-26
Identities = 134/174 (77%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350
|||||| || | || || || | |||||| |||||||| || || | || ||||||||
Sbjct 7429 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGG 7370
Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410
|| ||||| |||||||| || ||||| | |||||| ||||||||||| | || ||
Sbjct 7369 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTC 7310
Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| || | |||||| || || ||||| |||||||||||||| |||||||| ||
Sbjct 7309 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 7256
>seq627
Length=279831
Score = 129 bits (142), Expect = 1e-24
Identities = 389/589 (66%), Gaps = 14/589 (2%)
Strand=Plus/Plus
Query 225415 CTCGTAATGAACAAT-TGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAA 225473
|||||| || || || ||| | ||| || ||| |||||||||||||||||||| || |
Sbjct 266169 CTCGTAGTGGACGATGTGCTG-GCAGACGTTGTCGAGGAAGCCAGAGTCGTGGGAGACGA 266227
Query 225474 TGATGGACGA-CACGTTCGTCAGGCCCTTGAGGTGCGTGAT-GAGCCATGCCACGTTGCT 225531
||||||| | || | | || | | ||||| || | |||||| ||||| |
Sbjct 266228 TGATGGAAGTGCAGG---GGGAGTTCAT-GAGGTA-GTCCTCGAGCCACTTGACGTTCTT 266282
Query 225532 GACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGC 225591
||||||| |||||| ||||| ||||| ||||||||||| || | | || || |||
Sbjct 266283 CACGTCCAAGTGGTTGGTAGGCTCGTCGAGAAGCAGGATATCGGGGGCCTCGAAGACGGC 266342
Query 225592 GCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTGAAACAGAGTG 225651
|| |||| || |||||| ||||| || || ||||||| ||| | | |
Sbjct 266343 ACGGCAAAGAGCCAACTTCATCTTCCAACCACCAGACAGGGCAGAGATCTCACCCTTGAC 266402
Query 225652 CTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGT---CTGGATAATGCGCTCGGGAGAGCT 225708
| | || ||| |||||| |||| |||| | || || | | || ||||| ||
Sbjct 266403 CATGGCCTCGGTGAAGCCGAACTCGTTGAGCTTGGCCTCGACA-TCAGCCTGGGAGGTCT 266461
Query 225709 -GCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGTCATGTCCGAGACAG 225767
| | ||||| || | | | | | ||| |||||| || | | |||
Sbjct 266462 CGACACCGGCATCGGCAAGCTTCTTCATGGTCCACTCAATGGTGGTCATCTCAGTGTCAG 266521
Query 225768 ACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCT 225827
| ||| | |||||| || ||| | || ||| || || || | |||||| ||||
Sbjct 266522 CAGAGTCCAGGTCGTGCTCGACGAAGACGGTCTTGACCTCGGACTGCTTGGGGAAACCCT 266581
Query 225828 CCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGA 225887
| | ||| | || || ||||| | || ||| ||| || | ||||||||||||
Sbjct 266582 CGACCTGCTCGTTGTTGATGGCACGCATGAGAGTAGACTTTCCGGAACCGTTGGGACCGC 266641
Query 225888 TGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGC 225947
|| ||||| | | || ||||||| | |||| | || ||| || || ||||||
Sbjct 266642 AAAGACCGTAGCGCTGGCCACGCTTGAGGCGGAGGTGGGTCTGGTTGAGAAGAATCTTGG 266701
Query 225948 CACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996
|||| |||||||||||||| ||| | ||| || ||||||||||||||
Sbjct 266702 CACCGTAGGCAAGGGAGAAGGTGCAGTTGCAAAGATCCTCACCCTCCTC 266750
>seq890
Length=99485
Score = 114 bits (126), Expect = 2e-20
Identities = 217/316 (69%), Gaps = 10/316 (3%)
Strand=Plus/Plus
Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356
|| ||||| || ||||| ||| ||||| || || || ||||||| ||||| | |
Sbjct 13807 CCAGTGTGAACATCCTCAGAGAAACCAATTTCGGCCGTTCCGCCGACCTCGACAAGAGAC 13866
Query 59357 TCTCGGCGGTAGACTGCGCATGTC--CCGACGCACACGGCGCCGCCAAAGGTGTCGCGAG 59414
|| || ||||||| | |||| | || ||||| | | | | || | ||| |||
Sbjct 13867 TCACGACGGTAGA--GAGCATTGCTACCAACGCAGATTGAGGCTCCCCATCTGTTACGAT 13924
Query 59415 AAACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAG 59474
||||| | || |||||||||||||||||| || || ||| | ||||||||||||
Sbjct 13925 TGACCTGCACGACACGGTAGAACAGTTCCTGAGTGGCACCCGCACCCTGCTCAACCCAAG 13984
Query 59475 TCTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCAT 59534
| ||||| || |||| |||| ||| |||| |||| || |||| ||||
Sbjct 13985 TTTGGTCATCAGTGACGCGGAAGTACTGAGGGCTCTGAACAAGGGCCGTCTTATCGTC-- 14042
Query 59535 GGGAAAAGTAGGG---CATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCAT 59591
| |||| ||| | |||||| | |||||||||| || |||||||| ||||
Sbjct 14043 -GCCCAAGTGCTCAACCATCAATTCCTTAACAAAGTCAGGGCGTGGGCAGAAGTCGGCAT 14101
Query 59592 CGAAGATGGCAAAGAA 59607
|||| |||||||||||
Sbjct 14102 CGAAAATGGCAAAGAA 14117
>seq526
Length=380746
Score = 87.8 bits (96), Expect = 3e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 195992 TGGGTCGTCTTTGACGAAATCCACTACATGTCCGACGATGCGCGTGGTACCGTGTGGGAA 196051
|||||||||||||||||||||||||||||| ||| | | | ||| ||| ||||||
Sbjct 87545 TGGGTCGTCTTTGACGAAATCCACTACATGAGAGACAAGACTAGAGGTGTCGTTTGGGAA 87486
Query 196052 GAAAGCCTTATCCTCATCCCGGATACCATCCGCTGTGTCTTTTTGTCCGCGACTGTTCCC 196111
|| | | | || || | || |||| |||||| ||||| ||||||| || |||||
Sbjct 87485 GAGACCATCATTCTTCTTCCTGATAAGGTCCGCTACGTCTTCCTGTCCGCCACCATTCCC 87426
Query 196112 AACGCC 196117
||||||
Sbjct 87425 AACGCC 87420
>seq757
Length=767470
Score = 86.0 bits (94), Expect = 1e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573
|||||| || | |||| || |||| |||||| ||||||||||||| | ||||| |||
Sbjct 151278 GAGCCAGGCGATGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAACAACAGGACGTC 151337
Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633
|| | | || || || || | | || || |||||| ||||| || |||||||||||
Sbjct 151338 GGCGCCCTTCAGCATAGCACGAGCCAAAGCCAACTTCATCTTCCATCCTCCGGACAGGGA 151397
Query 225634 GCCGA 225638
|||||
Sbjct 151398 GCCGA 151402
>seq572
Length=609512
Score = 84.2 bits (92), Expect = 4e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 31427 GTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCAT 31486
||| || |||| ||||| | | |||||| | |||| || ||| || ||||||||
Sbjct 17078 GTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCTCGGGAGACTCGAAAGGCAT 17137
Query 31487 GCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCG 31546
||| || || ||| | || ||||||||||||||| | ||||| ||||| | ||
Sbjct 17138 GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGGTGACG 17197
Query 31547 CATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTGT 31602
|||||| || | |||||||||| | |||| |||| |||||| ||||||
Sbjct 17198 CATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCAATGATCTTGT 17253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921611697659880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |