Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq572 448 9e-121
seq686 300 3e-76
>seq572
Length=609512
Score = 448 bits (496), Expect = 9e-121
Identities = 1251/1897 (66%), Gaps = 77/1897 (4%)
Strand=Plus/Plus
Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796
||| ||||||| | || || || |||| || | ||||||||||||||| ||||||
Sbjct 16431 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 16490
Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856
|| ||| |||| || || |||||| || | ||| ||| | | ||
Sbjct 16491 AGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTGCCCAT-------TGTCGG 16543
Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916
||||| || || ||| ||||||||| |||||||| ||||| | || ||
Sbjct 16544 --GTCCTT---CATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCG 16598
Query 243917 GCGGCCATGGTGATGA--GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974
|| ||||| ||| | ||| | ||| |||||||| | | |||||||| | | ||
Sbjct 16599 GCAGCCATC-TGAACAACGGTGCG-CTGGGATATCTCCCAGACGGTCTTGTACAGAGCCT 16656
Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034
||| | |||| | ||||||||| | || || || | | |||||| ||
Sbjct 16657 TGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGT 16716
Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCT----CGACCAGGTGCCTG 244090
| |||| |||| ||||||||||| | | || ||| | |||||| |
Sbjct 16717 TCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGG---- 16772
Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150
|| || ||||| ||||| || | || || || || ||||||| |||| | || |||
Sbjct 16773 TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGC 16832
Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210
|||| || ||| ||||||||| ||||||| ||| ||||| |||||||| | ||
Sbjct 16833 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 16892
Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTCC 244267
|||| |||||| | ||| |||||| || ||| ||| ||| ||| |||||
Sbjct 16893 AGCAAACTGTTGCGCACACCGTGCTCCTTGAT-------CTG--CTCCTTCAGAGAGTCC 16943
Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327
|| || || ||||||| | | |||| ||||||||| |||| || | |||| |
Sbjct 16944 CA-ATCCC--AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGG 17000
Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA-CAGCT 244386
|| ||| ||||||||| || | ||||| || || || |||||||| | |||
Sbjct 17001 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGAC 17060
Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446
| ||| || || |||| ||||||||||||||||||| ||||||| | || |||||||
Sbjct 17061 ATGGTC-AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCTC 17119
Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506
| | ||| || |||| | | ||| | || || || ||||| || ||||
Sbjct 17120 GGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAG 17179
Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566
|| ||||| | ||| ||| ||||| | || ||||| |||||||| |||| |
Sbjct 17180 ACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGAC 17239
Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626
|| || | |||||| | |||||| | | | ||| ||| ||| ||| ||
Sbjct 17240 ATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAA 17299
Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686
|||||| | | | ||| | | || | || || | || || | |
Sbjct 17300 GTCGTAGAC------ACCATCGTTG-TAGTCA-----ACGAAGGTGGGCAGAGCAAGGGA 17347
Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746
|||| ||||||||| || ||||| || | | ||||| | ||||| ||||||||
Sbjct 17348 AGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAG 17407
Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806
||| || ||| || || |||| || || ||| |||| |||| || |||||
Sbjct 17408 GTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTT 17467
Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866
||| ||||||||||| || |||||| ||| || |||||| | | ||| || |
Sbjct 17468 GTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTT 17527
Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926
| ||||||| ||| ||||| |||||||||| |||||| ||||| ||||||
Sbjct 17528 CTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTC 17587
Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986
|||||| ||| || || | ||||| |||||| ||||||||||| ||||
Sbjct 17588 GAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCA 17647
Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046
||| || | || ||| |||| |||||| || |||||||||||||| || |||| ||
Sbjct 17648 GTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAG 17707
Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106
||| | || | ||| ||| |||| |||||| | || |||| || || |||||
Sbjct 17708 GTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAGAC 17767
Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166
|||| ||||||||||||| | ||||| ||||| ||||| || ||||||||||| |||||
Sbjct 17768 GTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTG 17827
Query 245167 GTCCACCATCCTCTCGAGC-GCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222
|| | | | ||||| | |||| |||| || || | || | | ||||| |
Sbjct 17828 ATCGA----CGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCG 17883
Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACAT 245280
|| |||||||||||| || |||| ||| || | | | | | || | || |
Sbjct 17884 AGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGA- 17942
Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340
|| | || || || ||||||||| | ||||||| |||||| |||||| || ||
Sbjct 17943 -CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACC 18001
Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400
||| || ||| |||||||| || || ||||| || ||||||||| || ||| |
Sbjct 18002 CTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGT 18061
Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTA 245460
| | |||||| || |||||| ||||||||| ||| | ||| || | || |||
Sbjct 18062 ACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 18121
Query 245461 CGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA--CCTCATGAG 245517
|||| || | | || |||| ||| || || || ||| | ||| | |||||
Sbjct 18122 GGTCTCGATGACGCGC-TCGACGTTATCACCCCAGA--TGCCGACTGCAACACGCATGAT 18178
Query 245518 GGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTC 245574
|||||||||| ||||| || || || | |||||||| ||| || | ||
Sbjct 18179 CATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG---CTTGAGCAGGTATGATCTTTC 18235
Query 245575 GAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611
|| |||||||| || ||||| |||| ||||||
Sbjct 18236 CAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCG 18272
>seq686
Length=266282
Score = 300 bits (332), Expect = 3e-76
Identities = 610/907 (67%), Gaps = 69/907 (8%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || ||| ||||||||||||||||||||| ||
Sbjct 149380 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 149321
Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAA 42416
||||||| || |||| | || || || | || |||| ||| ||
Sbjct 149320 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 149261
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|||| || |||||||||||||| || ||||| || ||||| |||||||| | | |
Sbjct 149260 CACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGTCGAGCGC 149201
Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
||| ||||| ||| | ||||| ||||||||||||||||||||||| ||
Sbjct 149200 TTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 149141
Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596
|||||| | ||||||||| ||| || || || |||| |||||| ||| ||||
Sbjct 149140 GAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGCCCGCG 149081
Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA-------------------------- 42630
|||| | | || ||||| ||||| || || |
Sbjct 149080 CAGCGCACCTACCTCTTCAACGCCATTGACACCAGTACGTGAACACATCTCGCGCCTACA 149021
Query 42631 TGCCCTG------------CATCA-AG--------------AAGAAGGCGGACTGGGCGC 42663
||||| ||||| || |||||||| |||||||| |
Sbjct 149020 TGCCCGCATCGCTAACTACCATCACAGTCCCTGCCATTCGCAAGAAGGCTGACTGGGCCC 148961
Query 42664 TCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722
| || |||||| || | || | | | |||| | || | ||||| |||||| ||||
Sbjct 148960 TGAAGTGGATC-AGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCT 148902
Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGT 42781
|| ||||| ||||||||| || || || ||||||||||| ||||||||| || |||
Sbjct 148901 GTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGT 148842
Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841
|| ||||| || || |||||||| ||||| |||||| | | |||||||| || || |
Sbjct 148841 CTC-ATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCACAC 148783
Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901
||||||||||||||| ||| ||| ||||||| |||| | | | || ||| |||
Sbjct 148782 CGACTTTGCCTGCCTCTTGTACTC---TCACCTCAAGCAC---CGCCCCAACAAGCAGGT 148729
Query 42902 C---CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958
| || ||||||| || ||||| |||| ||| ||||||||||||| || | ||
Sbjct 148728 CATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGCTCT 148669
Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018
|||| | || ||||||||||| | || | ||| ||||||| ||| ||| ||
Sbjct 148668 GCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGC 148609
Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078
||||| |||||| | | || | | ||||||| | | |||||||||
Sbjct 148608 CGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTCGA 148549
Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138
||| |||||||||||||| | | |||||||||||||| || |||||||| ||||| ||
Sbjct 148548 CTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCTGA 148489
Query 43139 CTACCAG 43145
|||||||
Sbjct 148488 CTACCAG 148482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944328233861040
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