Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq572 448 9e-121 seq686 300 3e-76 >seq572 Length=609512 Score = 448 bits (496), Expect = 9e-121 Identities = 1251/1897 (66%), Gaps = 77/1897 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||| | || || || |||| || | ||||||||||||||| |||||| Sbjct 16431 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 16490 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| || || |||||| || | ||| ||| | | || Sbjct 16491 AGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTGCCCAT-------TGTCGG 16543 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||| ||||||||| |||||||| ||||| | || || Sbjct 16544 --GTCCTT---CATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCG 16598 Query 243917 GCGGCCATGGTGATGA--GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 || ||||| ||| | ||| | ||| |||||||| | | |||||||| | | || Sbjct 16599 GCAGCCATC-TGAACAACGGTGCG-CTGGGATATCTCCCAGACGGTCTTGTACAGAGCCT 16656 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 ||| | |||| | ||||||||| | || || || | | |||||| || Sbjct 16657 TGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGT 16716 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCT----CGACCAGGTGCCTG 244090 | |||| |||| ||||||||||| | | || ||| | |||||| | Sbjct 16717 TCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGG---- 16772 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| ||||| || | || || || || ||||||| |||| | || ||| Sbjct 16773 TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGC 16832 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| ||||||||| ||||||| ||| ||||| |||||||| | || Sbjct 16833 TCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 16892 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTCC 244267 |||| |||||| | ||| |||||| || ||| ||| ||| ||| ||||| Sbjct 16893 AGCAAACTGTTGCGCACACCGTGCTCCTTGAT-------CTG--CTCCTTCAGAGAGTCC 16943 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || || || ||||||| | | |||| ||||||||| |||| || | |||| | Sbjct 16944 CA-ATCCC--AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGG 17000 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA-CAGCT 244386 || ||| ||||||||| || | ||||| || || || |||||||| | ||| Sbjct 17001 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGAC 17060 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 | ||| || || |||| ||||||||||||||||||| ||||||| | || ||||||| Sbjct 17061 ATGGTC-AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCTC 17119 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | | ||| || |||| | | ||| | || || || ||||| || |||| Sbjct 17120 GGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAG 17179 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||| | ||| ||| ||||| | || ||||| |||||||| |||| | Sbjct 17180 ACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGAC 17239 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 || || | |||||| | |||||| | | | ||| ||| ||| ||| || Sbjct 17240 ATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAA 17299 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 |||||| | | | ||| | | || | || || | || || | | Sbjct 17300 GTCGTAGAC------ACCATCGTTG-TAGTCA-----ACGAAGGTGGGCAGAGCAAGGGA 17347 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 |||| ||||||||| || ||||| || | | ||||| | ||||| |||||||| Sbjct 17348 AGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAG 17407 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| || ||| || || |||| || || ||| |||| |||| || ||||| Sbjct 17408 GTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTT 17467 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||| ||||||||||| || |||||| ||| || |||||| | | ||| || | Sbjct 17468 GTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTT 17527 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | ||||||| ||| ||||| |||||||||| |||||| ||||| |||||| Sbjct 17528 CTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTC 17587 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 |||||| ||| || || | ||||| |||||| ||||||||||| |||| Sbjct 17588 GAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCA 17647 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 ||| || | || ||| |||| |||||| || |||||||||||||| || |||| || Sbjct 17648 GTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAG 17707 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 ||| | || | ||| ||| |||| |||||| | || |||| || || ||||| Sbjct 17708 GTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAGAC 17767 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 |||| ||||||||||||| | ||||| ||||| ||||| || ||||||||||| ||||| Sbjct 17768 GTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTG 17827 Query 245167 GTCCACCATCCTCTCGAGC-GCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 || | | | ||||| | |||| |||| || || | || | | ||||| | Sbjct 17828 ATCGA----CGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCG 17883 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACAT 245280 || |||||||||||| || |||| ||| || | | | | | || | || | Sbjct 17884 AGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGA- 17942 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 || | || || || ||||||||| | ||||||| |||||| |||||| || || Sbjct 17943 -CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACC 18001 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400 ||| || ||| |||||||| || || ||||| || ||||||||| || ||| | Sbjct 18002 CTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGT 18061 Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTA 245460 | | |||||| || |||||| ||||||||| ||| | ||| || | || ||| Sbjct 18062 ACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 18121 Query 245461 CGTCTGGA-GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA--CCTCATGAG 245517 |||| || | | || |||| ||| || || || ||| | ||| | ||||| Sbjct 18122 GGTCTCGATGACGCGC-TCGACGTTATCACCCCAGA--TGCCGACTGCAACACGCATGAT 18178 Query 245518 GGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTC 245574 |||||||||| ||||| || || || | |||||||| ||| || | || Sbjct 18179 CATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG---CTTGAGCAGGTATGATCTTTC 18235 Query 245575 GAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 || |||||||| || ||||| |||| |||||| Sbjct 18236 CAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCG 18272 >seq686 Length=266282 Score = 300 bits (332), Expect = 3e-76 Identities = 610/907 (67%), Gaps = 69/907 (8%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||||||||| || Sbjct 149380 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 149321 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAA 42416 ||||||| || |||| | || || || | || |||| ||| || Sbjct 149320 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 149261 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||||||||| || ||||| || ||||| |||||||| | | | Sbjct 149260 CACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGTCGAGCGC 149201 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 ||| ||||| ||| | ||||| ||||||||||||||||||||||| || Sbjct 149200 TTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 149141 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||||||| ||| || || || |||| |||||| ||| |||| Sbjct 149140 GAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTACATCAAGGAGCCCGCG 149081 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA-------------------------- 42630 |||| | | || ||||| ||||| || || | Sbjct 149080 CAGCGCACCTACCTCTTCAACGCCATTGACACCAGTACGTGAACACATCTCGCGCCTACA 149021 Query 42631 TGCCCTG------------CATCA-AG--------------AAGAAGGCGGACTGGGCGC 42663 ||||| ||||| || |||||||| |||||||| | Sbjct 149020 TGCCCGCATCGCTAACTACCATCACAGTCCCTGCCATTCGCAAGAAGGCTGACTGGGCCC 148961 Query 42664 TCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 | || |||||| || | || | | | |||| | || | ||||| |||||| |||| Sbjct 148960 TGAAGTGGATC-AGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCT 148902 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGT 42781 || ||||| ||||||||| || || || ||||||||||| ||||||||| || ||| Sbjct 148901 GTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGT 148842 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| || || |||||||| ||||| |||||| | | |||||||| || || | Sbjct 148841 CTC-ATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCACAC 148783 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||| ||| ||| ||||||| |||| | | | || ||| ||| Sbjct 148782 CGACTTTGCCTGCCTCTTGTACTC---TCACCTCAAGCAC---CGCCCCAACAAGCAGGT 148729 Query 42902 C---CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 | || ||||||| || ||||| |||| ||| ||||||||||||| || | || Sbjct 148728 CATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGCTCT 148669 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 |||| | || ||||||||||| | || | ||| ||||||| ||| ||| || Sbjct 148668 GCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGC 148609 Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 ||||| |||||| | | || | | ||||||| | | ||||||||| Sbjct 148608 CGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTCGA 148549 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 ||| |||||||||||||| | | |||||||||||||| || |||||||| ||||| || Sbjct 148548 CTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCTGA 148489 Query 43139 CTACCAG 43145 ||||||| Sbjct 148488 CTACCAG 148482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328233861040