Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq356 127 5e-24 seq863 111 4e-19 seq477 93.3 1e-13 >seq356 Length=254992 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | || || ||||| | || ||| || |||||||| |||||| Sbjct 83725 TGGCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCG 83784 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| || ||||| || || ||||| |||||||| |||||||| || Sbjct 83785 CTCAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGA 83844 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || | |||||||| || || | || || || Sbjct 83845 GGGATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCG 83904 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||| |||||||| || ||||| ||||||||||| |||||||| Sbjct 83905 ACTTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | || || || || || || || || | Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||||| ||||| || || Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| |||| || ||||| || || | || ||||| || Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 84135 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| |||||||| ||||| || ||||||||||| |||||||| Sbjct 84136 TCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 >seq863 Length=517823 Score = 111 bits (122), Expect = 4e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 || ||| ||||| ||||| || | || ||||| ||||||||||||||||| || Sbjct 7429 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGG 7370 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| || || || |||||||| || | || || || || || | ||| ||| || Sbjct 7369 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTC 7310 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || || ||||| ||||| || ||||| ||||||||||| |||||||| || Sbjct 7309 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 7256 >seq477 Length=261965 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| ||||| || || || | || || || ||||||||| Sbjct 234213 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 234272 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| || || || |||||||| || | || || || || Sbjct 234273 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 234332 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || || || || || ||||| || ||||| ||||| ||||| Sbjct 234333 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 234391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179640358794862