Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq572 167 3e-36
seq686 123 3e-23
seq95 100 3e-16
>seq572
Length=609512
Score = 167 bits (184), Expect = 3e-36
Identities = 1137/1813 (63%), Gaps = 69/1813 (4%)
Strand=Plus/Plus
Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656
|| ||||||||||| ||||||||||| || |||||||| | | ||||| ||
Sbjct 16467 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTG 16526
Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716
| |||| | ||| || | |||| || ||| | ||||| || |||||||||
Sbjct 16527 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAG 16586
Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 113773
||||| || || ||||| | || || | | || | || ||||| || ||
Sbjct 16587 GCACCACGGTCGGCAGCCATCTGAA---CAACGGTGCGCTGGGATATCTCCCAGACGGTC 16643
Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833
|||| || ||| | ||| | || || | ||| || ||||| || ||| |
Sbjct 16644 TTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA---ACCGTTC 16700
Query 113834 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890
| | | |||| | | |||||| | | ||||| || || || | |||||||| |
Sbjct 16701 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 16760
Query 113891 A----CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 113946
| | || | || ||||| ||||| || || || || | | |||||
Sbjct 16761 AACAACCAGGGG----TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGAT 16816
Query 113947 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGT 114006
|||| ||||||||||| |||||||| ||||| |||||||| || | |||||||| ||
Sbjct 16817 GTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 16876
Query 114007 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 114066
|||||||| || | ||| | ||||| || | ||| | ||| | || | ||||| ||
Sbjct 16877 AGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 16936
Query 114067 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 114126
| |||||| || || | | || | | |||||| || |||||||||||||
Sbjct 16937 AGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACC 16996
Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA 114186
|||||| || || ||||| | || ||| | |||||| ||| |||| | ||
Sbjct 16997 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCT--GA 17054
Query 114187 GCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 114244
| | | | || || ||||| || || ||||| || || || | | |
Sbjct 17055 ACAGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG 17114
Query 114245 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304
|||||| || || || | | || | || |||| || ||||| ||||||
Sbjct 17115 GCCTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACA 17174
Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAA 114361
||||| ||||| ||||| || | ||| || || ||||| ||| ||||| ||
Sbjct 17175 CCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGGTAG 17231
Query 114362 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 114421
|| ||| || | | | || | || || |||| |||| || ||||||
Sbjct 17232 TGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGC 17291
Query 114422 TTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477
|| | | | || | | | || | | ||| || | | || || || | ||
Sbjct 17292 TTCTGGAAGTCGTAGACACCATCGT-TGTAGTCAACGA---AGGTGGGCAGAGCAAGGGA 17347
Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537
|||| || || |||| | ||| || | |||||| || || || || || |
Sbjct 17348 AGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAG 17407
Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597
|| || || || || || | |||||| || || ||| ||| ||||||||
Sbjct 17408 GTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTT 17467
Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CAT 114656
|||||||||| | || | || ||||| || || | || ||| || || | ||| | | |
Sbjct 17468 GTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTT 17527
Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGA 114710
| | | || | ||| ||| || |||| |||| ||||||||| ||| |
Sbjct 17528 CTGGGCCTTG----ATGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTCTCGTACA 17580
Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770
||| || ||||| || || | || | || || || || || ||||| | ||
Sbjct 17581 AGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGA 17640
Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830
| | ||| | | || ||| || | ||||||||| || || ||||||||||||||
Sbjct 17641 GGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGA 17700
Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890
||| || || || || | || || | || || || ||||| |||| || |
Sbjct 17701 GGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACT 17760
Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG----- 114945
| | || || |||||||| || || ||||| | |||| | || | ||||
Sbjct 17761 CGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCC---AGGACGCTTGT 17817
Query 114946 -ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004
||| |||| | || || | || ||| ||||| || |||||||| ||||||| ||
Sbjct 17818 TGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACAC 17877
Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064
| | || ||| || || || |||| || | |||| | || | || ||
Sbjct 17878 CGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGT 17937
Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124
| |||||| || || ||| ||| ||||| ||||| | |||| || ||||||
Sbjct 17938 TGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGA 17997
Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184
| || || || ||||| |||| | ||| |||||||| |||| || | |
Sbjct 17998 TACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAG 18057
Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTT 115242
| ||||||||||||||||| || || | |||||| ||| | | |||| ||||||
Sbjct 18058 GGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAG 18115
Query 115243 ATCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 115301
| ||||||||| | |||| || | | || || || || |||| | || ||||
Sbjct 18116 GTTGTAGGTCTCGATGACGCGCTCG-ACGTTATCACCCCAGATGCCGACTGCAACACGCA 18174
Query 115302 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA-ACTCTTC 115360
| | ||||| |||||| | || | | ||||| ||| | | ||||| ||||
Sbjct 18175 TGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATCTT- 18233
Query 115361 TCCAAGGTCTTGA 115373
|||| ||||||||
Sbjct 18234 TCCAGGGTCTTGA 18246
>seq686
Length=266282
Score = 123 bits (136), Expect = 3e-23
Identities = 304/456 (67%), Gaps = 10/456 (2%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
|||||| | || |||||||| |||||||| ||||| ||| | | | ||| ||||||||
Sbjct 148485 GTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 148544
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
|| || || ||||| || || | | |||| | || | | |||||
Sbjct 148545 GAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AGGAGG 148602
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| || | ||| |||||||||||| |||| | |||||||| |||| ||
Sbjct 148603 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 148662
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
|| || || || || || |||| ||| |||||| | ||||| || | |||| |
Sbjct 148663 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 148722
Query 125996 TGAATGGTGTCCACCCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052
| |||| | | || | | || | || | ||||| || ||||||
Sbjct 148723 TCAATGACCTGCTTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAG 148779
Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112
|| ||| ||||||||||||||||||||||| || || |||||| ||| || ||||||
Sbjct 148780 TCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATG 148839
Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172
||||| |||||||| | ||| || || | ||| | ||| ||||||||| |||||
Sbjct 148840 AGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCA 148899
Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208
||| || || |||| ||||||| || ||||||
Sbjct 148900 ACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 148935
>seq95
Length=35920
Score = 100 bits (110), Expect = 3e-16
Identities = 272/409 (67%), Gaps = 13/409 (3%)
Strand=Plus/Minus
Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849
|| || ||||| || || | || || | ||||||||| || | ||| || | |||
Sbjct 25787 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 25728
Query 10850 ATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 10907
| |||||| | ||| | || | | | || || |||||||| ||||||| || || |
Sbjct 25727 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 25670
Query 10908 TGGTTTGTTCGCGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 10963
||| |||||| || || || | ||| | |||| | ||| ||| | |||
Sbjct 25669 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 25611
Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023
| |||||| || ||||||||||| | ||| || || | | | |||||| | ||||
Sbjct 25610 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTTGCAAAC 25551
Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG--CGGCGG 11081
| ||||| ||||| | ||||||||| |||||||| || ||||| | || | || |
Sbjct 25550 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 25491
Query 11082 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141
| | || |||||| || || || || ||| |||| ||| || | ||||| |
Sbjct 25490 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAATGTCTTAC 25433
Query 11142 CCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190
| || || || || || |||| ||| ||||| |||||| | || ||
Sbjct 25432 CGGTTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCC 25384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597346663231320
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