Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq572 167 3e-36 seq686 123 3e-23 seq95 100 3e-16 >seq572 Length=609512 Score = 167 bits (184), Expect = 3e-36 Identities = 1137/1813 (63%), Gaps = 69/1813 (4%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| ||||||||||| || |||||||| | | ||||| || Sbjct 16467 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTG 16526 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | ||| || | |||| || ||| | ||||| || ||||||||| Sbjct 16527 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAG 16586 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 113773 ||||| || || ||||| | || || | | || | || ||||| || || Sbjct 16587 GCACCACGGTCGGCAGCCATCTGAA---CAACGGTGCGCTGGGATATCTCCCAGACGGTC 16643 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| || ||| | ||| | || || | ||| || ||||| || ||| | Sbjct 16644 TTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA---ACCGTTC 16700 Query 113834 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890 | | | |||| | | |||||| | | ||||| || || || | |||||||| | Sbjct 16701 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 16760 Query 113891 A----CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 113946 | | || | || ||||| ||||| || || || || | | ||||| Sbjct 16761 AACAACCAGGGG----TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGAT 16816 Query 113947 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGT 114006 |||| ||||||||||| |||||||| ||||| |||||||| || | |||||||| || Sbjct 16817 GTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 16876 Query 114007 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 114066 |||||||| || | ||| | ||||| || | ||| | ||| | || | ||||| || Sbjct 16877 AGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 16936 Query 114067 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 114126 | |||||| || || | | || | | |||||| || ||||||||||||| Sbjct 16937 AGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACC 16996 Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA 114186 |||||| || || ||||| | || ||| | |||||| ||| |||| | || Sbjct 16997 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCT--GA 17054 Query 114187 GCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 114244 | | | | || || ||||| || || ||||| || || || | | | Sbjct 17055 ACAGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG 17114 Query 114245 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304 |||||| || || || | | || | || |||| || ||||| |||||| Sbjct 17115 GCCTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACA 17174 Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAA 114361 ||||| ||||| ||||| || | ||| || || ||||| ||| ||||| || Sbjct 17175 CCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGGTAG 17231 Query 114362 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 114421 || ||| || | | | || | || || |||| |||| || |||||| Sbjct 17232 TGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGC 17291 Query 114422 TTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 || | | | || | | | || | | ||| || | | || || || | || Sbjct 17292 TTCTGGAAGTCGTAGACACCATCGT-TGTAGTCAACGA---AGGTGGGCAGAGCAAGGGA 17347 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 |||| || || |||| | ||| || | |||||| || || || || || | Sbjct 17348 AGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAG 17407 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || || || || || || | |||||| || || ||| ||| |||||||| Sbjct 17408 GTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTT 17467 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CAT 114656 |||||||||| | || | || ||||| || || | || ||| || || | ||| | | | Sbjct 17468 GTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCTT 17527 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGA 114710 | | | || | ||| ||| || |||| |||| ||||||||| ||| | Sbjct 17528 CTGGGCCTTG----ATGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTCTCGTACA 17580 Query 114711 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 114770 ||| || ||||| || || | || | || || || || || ||||| | || Sbjct 17581 AGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGA 17640 Query 114771 GAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTG 114830 | | ||| | | || ||| || | ||||||||| || || |||||||||||||| Sbjct 17641 GGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGA 17700 Query 114831 AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 114890 ||| || || || || | || || | || || || ||||| |||| || | Sbjct 17701 GGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACT 17760 Query 114891 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG----- 114945 | | || || |||||||| || || ||||| | |||| | || | |||| Sbjct 17761 CGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCC---AGGACGCTTGT 17817 Query 114946 -ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 ||| |||| | || || | || ||| ||||| || |||||||| ||||||| || Sbjct 17818 TGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACAC 17877 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 | | || ||| || || || |||| || | |||| | || | || || Sbjct 17878 CGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGT 17937 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 | |||||| || || ||| ||| ||||| ||||| | |||| || |||||| Sbjct 17938 TGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGA 17997 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || || || ||||| |||| | ||| |||||||| |||| || | | Sbjct 17998 TACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAG 18057 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTT 115242 | ||||||||||||||||| || || | |||||| ||| | | |||| |||||| Sbjct 18058 GGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAG 18115 Query 115243 ATCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 115301 | ||||||||| | |||| || | | || || || || |||| | || |||| Sbjct 18116 GTTGTAGGTCTCGATGACGCGCTCG-ACGTTATCACCCCAGATGCCGACTGCAACACGCA 18174 Query 115302 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA-ACTCTTC 115360 | | ||||| |||||| | || | | ||||| ||| | | ||||| |||| Sbjct 18175 TGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGATCTT- 18233 Query 115361 TCCAAGGTCTTGA 115373 |||| |||||||| Sbjct 18234 TCCAGGGTCTTGA 18246 >seq686 Length=266282 Score = 123 bits (136), Expect = 3e-23 Identities = 304/456 (67%), Gaps = 10/456 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| | || |||||||| |||||||| ||||| ||| | | | ||| |||||||| Sbjct 148485 GTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 148544 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || || ||||| || || | | |||| | || | | ||||| Sbjct 148545 GAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AGGAGG 148602 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | ||| |||||||||||| |||| | |||||||| |||| || Sbjct 148603 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 148662 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || || || || |||| ||| |||||| | ||||| || | |||| | Sbjct 148663 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 148722 Query 125996 TGAATGGTGTCCACCCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 | |||| | | || | | || | || | ||||| || |||||| Sbjct 148723 TCAATGACCTGCTTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAG 148779 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| ||||||||||||||||||||||| || || |||||| ||| || |||||| Sbjct 148780 TCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATG 148839 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 ||||| |||||||| | ||| || || | ||| | ||| ||||||||| ||||| Sbjct 148840 AGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCA 148899 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 ||| || || |||| ||||||| || |||||| Sbjct 148900 ACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 148935 >seq95 Length=35920 Score = 100 bits (110), Expect = 3e-16 Identities = 272/409 (67%), Gaps = 13/409 (3%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 || || ||||| || || | || || | ||||||||| || | ||| || | ||| Sbjct 25787 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 25728 Query 10850 ATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 10907 | |||||| | ||| | || | | | || || |||||||| ||||||| || || | Sbjct 25727 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 25670 Query 10908 TGGTTTGTTCGCGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 10963 ||| |||||| || || || | ||| | |||| | ||| ||| | ||| Sbjct 25669 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 25611 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023 | |||||| || ||||||||||| | ||| || || | | | |||||| | |||| Sbjct 25610 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTTGCAAAC 25551 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG--CGGCGG 11081 | ||||| ||||| | ||||||||| |||||||| || ||||| | || | || | Sbjct 25550 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 25491 Query 11082 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141 | | || |||||| || || || || ||| |||| ||| || | ||||| | Sbjct 25490 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAATGTCTTAC 25433 Query 11142 CCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 | || || || || || |||| ||| ||||| |||||| | || || Sbjct 25432 CGGTTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCC 25384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597346663231320