Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq863 98.7 1e-15
seq356 95.1 1e-14
seq477 86.0 7e-12
>seq863
Length=517823
Score = 98.7 bits (108), Expect = 1e-15
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 42052 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCT 42111
|||| || |||||||| || ||||| || || ||||||||||||| || | || |||||
Sbjct 7415 CGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCT 7356
Query 42112 TGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
||||| ||| || |||| | | | |||||| ||| ||||| || | ||||
Sbjct 7355 TGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGA 7296
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || |||||||| || ||||| || ||||| |||||
Sbjct 7295 TAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 7259
>seq356
Length=254992
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| || | ||||| || |||||| ||||| |||||||| | ||| || || |
Sbjct 83968 CGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCA 84027
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| || ||||| || | ||||||||||||| || | | ||||||
Sbjct 84028 TCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTA 84087
Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|| ||| || |||| ||| | | | ||||| ||||| || |||| ||| ||
Sbjct 84088 TCTTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAAT 84146
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || || ||||| || || || |||||
Sbjct 84147 CGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || |||||||| || || ||| || | || || | |||||| ||||||||
Sbjct 83764 TCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAG 83823
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| || ||||||||||||| || | | |||||||||| ||| || || | |
Sbjct 83824 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTA 83883
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | |||||| || || || || | ||| || || || || || |||||||| ||
Sbjct 83884 TCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACG 83943
Query 42198 AAGATTTGCAT 42208
||||| |||||
Sbjct 83944 AAGATCTGCAT 83954
>seq477
Length=261965
Score = 86.0 bits (94), Expect = 7e-12
Identities = 136/194 (70%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 42007 GCAATGTG-CTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065
|||||| | || |||| || || ||||| || | || || || | || || ||||||
Sbjct 234198 GCAATGAGACTAACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 234257
Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125
|| |||||||| || || ||||||||||| | || | || |||||||||| ||| ||
Sbjct 234258 TTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 234317
Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185
|||| | | | ||||||| || || || || | || ||||| || |||||
Sbjct 234318 GACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTC 234377
Query 42186 AGCGTCTTTACAAA 42199
|| ||||| || ||
Sbjct 234378 AGGGTCTTCACGAA 234391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543206491941360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |