Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq356 105 7e-18 >seq356 Length=254992 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||| | || || || || |||||||||||||| | Sbjct 83955 ACCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGA 84014 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || ||||||||||| ||||| | || | ||||||||||||||||| Sbjct 84015 CAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGG 84074 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || ||| || || | || || | || || Sbjct 84075 AATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAAC 84134 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||||| | || || |||||||| ||||| Sbjct 84135 CTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | || |||||| |||| || ||||||||||| Sbjct 84500 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 84559 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| |||||||| ||||| || || || || || || || || || ||| Sbjct 84560 GCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 84619 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 || || | ||||| || || || || | ||| | |||||||||||| Sbjct 84620 ACGTTATCGATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 84672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499638997874760