Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq572 313 2e-80
>seq572
Length=609512
Score = 313 bits (346), Expect = 2e-80
Identities = 1086/1673 (65%), Gaps = 40/1673 (2%)
Strand=Plus/Minus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||| | |||||| || ||||| | || ||||| |||||| | ||||||
Sbjct 18265 AACTACCAATACTTCGGCTTCAAGACCCTGGAAAGATCATACCTGCTCAAGCTTGATGGC 18206
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||| |||| || || || | ||||| || || |||| || || |
Sbjct 18205 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGAT 18146
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| | | || | | | | || |||| |||| | ||| |||
Sbjct 18145 AACGTCGAGCGCGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCC 18086
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952
|||| || || |||||||| || ||||| |||||| | ||||||| || |||||
Sbjct 18085 TCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCA--GCTGTCTTCATGCTTCCTCG 18028
Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
| ||| | |||| ||||| || || || | ||||| ||||||| ||| || |
Sbjct 18027 TCGAC-ATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATG 17969
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069
||||| || || || || || || ||| | ||| |||| ||||||| || |
Sbjct 17968 ATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTCAC--CGTATCCGTGCCACTGGCT 17911
Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129
|||| || || ||||| |||||||| ||||| || | || ||||| || ||||| |
Sbjct 17910 CCTATATTGCAGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTA 17851
Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189
||||| | || |||||||| || |||||||| | | | || ||||||| |||
Sbjct 17850 ACAACACTGCTCGCTACGTCGATCAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATCT 17791
Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249
| || |||||||||||||| ||||| | ||||| ||| |||| |||||||| ||||
Sbjct 17790 ACCTTGAGCCCTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCA 17731
Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309
| || || | ||| | ||||| ||| |||||||||| | || || || || ||||
Sbjct 17730 AGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGA 17671
Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369
| | |||||||| ||| ||| ||||| || | || |||||||| || || || |||
Sbjct 17670 AGAGAGTCGAGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGG 17611
Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428
| ||| | || | || || | |||||| | |||| | ||| ||||||||
Sbjct 17610 CTGACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACG-AGCGCGAGGGCAAG 17552
Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488
| | ||| || | || |||||| ||| || ||| | || | ||| |||
Sbjct 17551 GGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAG 17492
Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548
|| || | |||| ||| | | |||||| ||| |||| |||| ||||||| || ||
Sbjct 17491 ACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAAC 17432
Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608
||||| ||| ||||| || || ||||| ||||| | ||||| | || |||
Sbjct 17431 CTCGGAACTATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCACCCGAC 17372
Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668
||| | ||||| || ||| ||| ||| | ||| |||| ||||| || ||||
Sbjct 17371 GAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGT------TGACTAC 17318
Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT- 94727
| | | || | | ||| | || ||||| | || | ||| | | ||
Sbjct 17317 A--ACGA-TGGTGTCTACGACTTCCAGAAGCTTCACGAGGTCAC--TCAGGTCGTTGTTC 17263
Query 94728 -GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786
||| |||||| | | || || ||| ||||||||| || ||||| ||| |
Sbjct 17262 GCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAACAGCA 17203
Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846
|| || || || ||||| || |||| ||||||||| | || || || | |
Sbjct 17202 ACATGCGTCACCGCCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCC 17143
Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906
| || |||| | ||| ||| ||| || | | | || ||| || ||||| | ||
Sbjct 17142 TTCGCATGCCTTTCGAGTCTCCCGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCA 17083
Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966
| || ||| || ||| || || || |||||| ||| ||| | || |
Sbjct 17082 TCTACCACGCTGCTCTGACCATGTCTGTTCAGCTGGCCAAGGAGGAGGGC-ACCTACTCC 17024
Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026
| ||| | || || || | ||||| || | |||| |||| | ||| ||| |
Sbjct 17023 A--CGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCA 16966
Query 95027 AGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGT 95084
||||||| | || | || ||||| |||| | | || || | | | ||||||||
Sbjct 16965 AGCCCTCTGACCTCTGGGATTGGGACTCTCTGAAGGAGCAGA--TCAAGGAGCACGGTGT 16908
Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144
| ||| |||| || || |||||||| || |||||||| |||||||| | |||||
Sbjct 16907 GCGCAACAGTTTGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAA 16848
Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204
|||||||| ||||| || | |||||||||| | ||| | | || || || ||||| ||
Sbjct 16847 CAACGAGTGCTTCGAGCCATACACCTCCAACATCTACCAACGTCGTGTTCTTGCCGGCGA 16788
Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGG---G 95260
|||| || | ||| | | ||| || | || | |||| ||||| |
Sbjct 16787 GTTCCAGGTTGTTAACCCCTGGTTGTTGAAGGATCTCGTCGAC-ATGGGCCTGTGGTCCG 16729
Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAA 95320
|| || | ||||||| | | || ||||| || ||||||||||||| | |
Sbjct 16728 ATGCCA---TGAAGAACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAACA 16672
Query 95321 TACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373
| || | || ||||||| || ||||||||||| |||||||| | ||||||
Sbjct 16671 TTCCCGCTGAGGTCAAGGCTCTGTACAAGACCGTCTGGGAGATATCCCAGCGC 16619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494717455026840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |