Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq572 313 2e-80 >seq572 Length=609512 Score = 313 bits (346), Expect = 2e-80 Identities = 1086/1673 (65%), Gaps = 40/1673 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || ||||| | || ||||| |||||| | |||||| Sbjct 18265 AACTACCAATACTTCGGCTTCAAGACCCTGGAAAGATCATACCTGCTCAAGCTTGATGGC 18206 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| |||| || || || | ||||| || || |||| || || | Sbjct 18205 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGAT 18146 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | || | | | | || |||| |||| | ||| ||| Sbjct 18145 AACGTCGAGCGCGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCC 18086 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952 |||| || || |||||||| || ||||| |||||| | ||||||| || ||||| Sbjct 18085 TCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGCCA--GCTGTCTTCATGCTTCCTCG 18028 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | |||| ||||| || || || | ||||| ||||||| ||| || | Sbjct 18027 TCGAC-ATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATG 17969 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069 ||||| || || || || || || ||| | ||| |||| ||||||| || | Sbjct 17968 ATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTCAC--CGTATCCGTGCCACTGGCT 17911 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 |||| || || ||||| |||||||| ||||| || | || ||||| || ||||| | Sbjct 17910 CCTATATTGCAGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTA 17851 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| | || |||||||| || |||||||| | | | || ||||||| ||| Sbjct 17850 ACAACACTGCTCGCTACGTCGATCAGGGTGGCAACAAGCGTCCTGGCGCTTTCGCTATCT 17791 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || |||||||||||||| ||||| | ||||| ||| |||| |||||||| |||| Sbjct 17790 ACCTTGAGCCCTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCA 17731 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | ||| | ||||| ||| |||||||||| | || || || || |||| Sbjct 17730 AGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGA 17671 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | |||||||| ||| ||| ||||| || | || |||||||| || || || ||| Sbjct 17670 AGAGAGTCGAGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGG 17611 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 | ||| | || | || || | |||||| | |||| | ||| |||||||| Sbjct 17610 CTGACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACG-AGCGCGAGGGCAAG 17552 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | ||| || | || |||||| ||| || ||| | || | ||| ||| Sbjct 17551 GGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACCGAG 17492 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || | |||| ||| | | |||||| ||| |||| |||| ||||||| || || Sbjct 17491 ACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAAC 17432 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| ||| ||||| || || ||||| ||||| | ||||| | || ||| Sbjct 17431 CTCGGAACTATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCACCCGAC 17372 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| | ||||| || ||| ||| ||| | ||| |||| ||||| || |||| Sbjct 17371 GAGGTCGCTGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGT------TGACTAC 17318 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT- 94727 | | | || | | ||| | || ||||| | || | ||| | | || Sbjct 17317 A--ACGA-TGGTGTCTACGACTTCCAGAAGCTTCACGAGGTCAC--TCAGGTCGTTGTTC 17263 Query 94728 -GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 ||| |||||| | | || || ||| ||||||||| || ||||| ||| | Sbjct 17262 GCAACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCCGAGGCTCGCAACAGCA 17203 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || || || || ||||| || |||| ||||||||| | || || || | | Sbjct 17202 ACATGCGTCACCGCCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCC 17143 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 | || |||| | ||| ||| ||| || | | | || ||| || ||||| | || Sbjct 17142 TTCGCATGCCTTTCGAGTCTCCCGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCA 17083 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 | || ||| || ||| || || || |||||| ||| ||| | || | Sbjct 17082 TCTACCACGCTGCTCTGACCATGTCTGTTCAGCTGGCCAAGGAGGAGGGC-ACCTACTCC 17024 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | ||| | || || || | ||||| || | |||| |||| | ||| ||| | Sbjct 17023 A--CGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCA 16966 Query 95027 AGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGT 95084 ||||||| | || | || ||||| |||| | | || || | | | |||||||| Sbjct 16965 AGCCCTCTGACCTCTGGGATTGGGACTCTCTGAAGGAGCAGA--TCAAGGAGCACGGTGT 16908 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 | ||| |||| || || |||||||| || |||||||| |||||||| | ||||| Sbjct 16907 GCGCAACAGTTTGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAA 16848 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 |||||||| ||||| || | |||||||||| | ||| | | || || || ||||| || Sbjct 16847 CAACGAGTGCTTCGAGCCATACACCTCCAACATCTACCAACGTCGTGTTCTTGCCGGCGA 16788 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGG---G 95260 |||| || | ||| | | ||| || | || | |||| ||||| | Sbjct 16787 GTTCCAGGTTGTTAACCCCTGGTTGTTGAAGGATCTCGTCGAC-ATGGGCCTGTGGTCCG 16729 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAA 95320 || || | ||||||| | | || ||||| || ||||||||||||| | | Sbjct 16728 ATGCCA---TGAAGAACCGTATCATCGCCGAGAACGGTTCTATCCAGAACATCCCCAACA 16672 Query 95321 TACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || | || ||||||| || ||||||||||| |||||||| | |||||| Sbjct 16671 TTCCCGCTGAGGTCAAGGCTCTGTACAAGACCGTCTGGGAGATATCCCAGCGC 16619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717455026840