Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq572 176 4e-39 seq686 114 1e-20 seq356 100 3e-16 seq863 89.7 5e-13 >seq572 Length=609512 Score = 176 bits (194), Expect = 4e-39 Identities = 736/1146 (64%), Gaps = 43/1146 (4%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||| || || || |||||||| || | || || | || | ||| ||| | | Sbjct 16771 GGTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATG 16830 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| ||||| | || || | |||| || || |||||| || | Sbjct 16831 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAA 16890 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 | | |||| || |||| |||||| | || | ||||||| | | |||||||| Sbjct 16891 CGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCC 16950 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGGG 153265 | || | || || | | ||||||||||||||||| | | || | || ||| Sbjct 16951 AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGG 17010 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCG-CAGCTAGCCTCGA 153324 | ||| | |||| |||| |||| || | |||||| | ||| | || | Sbjct 17011 A--GCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATGGTC-A 17067 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA--ACGGCCGCTTCTTCGCT 153382 | || | | ||| ||||| ||| ||| | || |||||| |||| || || Sbjct 17068 GAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG--GCCTCGGGAGA 17125 Query 153383 CTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGAT 153442 |||| | |||||||| || | || || || || |||||||||| ||||| || || Sbjct 17126 CTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAAT 17185 Query 153443 GGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTAT-GGGATAGTGATTGCGATCGA 153501 ||| || || | ||||||| | || |||| | ||| ||||| ||| ||| | Sbjct 17186 GGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCGGGAACGGGGTAGTGGTTGACATCAA 17244 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | || ||||| | |||||| || || || | ||| | | | | ||| |||| ||| || | Sbjct 17245 TGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCGT 17304 Query 153562 AGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621 || |||| | | ||| | || |||| || |||| || ||||| | Sbjct 17305 AGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAAGGGAAGCCAAGTTGCAGACAG 17364 Query 153622 CCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 | ||| |||| ||| ||||| | |||||| | |||||||||| || || Sbjct 17365 CGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAG 17424 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 || | || | ||| ||||| ||||| ||| || || ||| | |||||| | || Sbjct 17425 TTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGT 17484 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798 ||| |||||| || | |||| ||| | ||| | || | ||| || | Sbjct 17485 TGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGC---TTCTGGGCCTTGATGG 17541 Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858 || ||| |||||||| |||||| |||||||| ||| ||||| ||||||| Sbjct 17542 TCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGT 17601 Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGT 153918 ||||||| || ||||| || |||| || || ||||| || | ||| |||||||| Sbjct 17602 AGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCA------GTCGGCGT 17655 Query 153919 T------GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972 | ||| | |||||||||||| || | |||||| ||| | ||||| || | Sbjct 17656 TCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGG 17715 Query 153973 CCTTGCAATCCTCCGCGCCCATG----TTGCGTTTCAGATTGA-GCACGCTATAGATGTC 154027 | | |||||| | ||||| ||||| || | | | || | | ||| ||| Sbjct 17716 CACGGACCTCCTCCTTG-CCATGGTTCTTGCG---CAAGTCCATGAACTCGA-AGACGTC 17770 Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATC 154084 |||||||||||| |||| ||||| || | || || |||| || || |||||||| Sbjct 17771 GGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATC 17830 Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCC 154144 ||||| ||| | | ||||| ||||| || | |||||| | ||| | | |||||| Sbjct 17831 GACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCC 17890 Query 154145 GTTGGT 154150 |||||| Sbjct 17891 GTTGGT 17896 >seq686 Length=266282 Score = 114 bits (126), Expect = 1e-20 Identities = 336/506 (66%), Gaps = 25/506 (5%) Strand=Plus/Minus Query 52336 TTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGCCACGCTGGCC 52394 ||||||| |||||| | ||||| ||||||||||| | || || | | || | | ||| Sbjct 148984 TTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGA-TGAGAACTCCTCCTTCGCC 148926 Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 |||| |||| ||||| ||| || ||||| | || || ||| |||||| || Sbjct 148925 CAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCC 148866 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||||| | || | | || | ||||| || ||||| ||| ||||||| | || Sbjct 148865 ATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATC 148806 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT---ACAAGACGCGC 52568 || || ||||| || || ||||| |||||||| |||||| |||| || | || | Sbjct 148805 TCCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCAC 148746 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626 | || || || | | || || |||| ||| || || || || | Sbjct 148745 -CGCCCCAACAA--GCA---GGTCA-----TTGAGGACATCATCGTTGATGCCGTCAAGA 148697 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 | || ||||||| | || | || ||||| || || || ||||||||| | | | Sbjct 148696 TTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACT 148637 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGCCA 52745 ||| ||||||| ||||| || || || || || |||| |||| |||| | | Sbjct 148636 TGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGT--CGCTCTTGGCAACGA 148579 Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804 ||| || ||| || ||| || || || || ||| | ||||| || |||| ||||| Sbjct 148578 CAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAA 148519 Query 52805 GACCAACTTTTTCGAGAAGCGAGTCG 52830 ||||||||| || |||||||| |||| Sbjct 148518 GACCAACTTCTTTGAGAAGCGTGTCG 148493 >seq356 Length=254992 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | ||| | | |||| ||||| || || ||||||||||| Sbjct 83727 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCT 83786 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || || || | || || || | |||| |||||||| ||||| ||||| Sbjct 83787 CAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 83846 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | | || | ||||| | ||||| || Sbjct 83847 GATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGAC 83906 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || |||||||| || || || || |||||||| Sbjct 83907 TTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | ||| | |||||||||| ||||||||||| || | Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| |||| | ||||| ||||| ||||| Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || || || ||| || || | | || | |||||| | || || ||| Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 84135 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||| || || || || || || || ||||||||||| Sbjct 84136 TCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 >seq863 Length=517823 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||||||| || || |||| |||| |||||||| ||||| || || || || || || Sbjct 7414 GTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTT 7355 Query 138519 GTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 ||| ||| || || | ||||| | | |||||||| |||||||||||| | || | Sbjct 7354 GTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGACGACTCCACCTCAAGGGTGA 7296 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || ||||| || || || || ||||||||| Sbjct 7295 TAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 7258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256637152880