Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq572 176 4e-39
seq686 114 1e-20
seq356 100 3e-16
seq863 89.7 5e-13
>seq572
Length=609512
Score = 176 bits (194), Expect = 4e-39
Identities = 736/1146 (64%), Gaps = 43/1146 (4%)
Strand=Plus/Plus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
|||| || || || |||||||| || | || || | || | ||| ||| | |
Sbjct 16771 GGTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATG 16830
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || ||| | ||||| ||||| | || || | |||| || || |||||| || |
Sbjct 16831 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAA 16890
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207
| | |||| || |||| |||||| | || | ||||||| | | ||||||||
Sbjct 16891 CGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCC 16950
Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGGG 153265
| || | || || | | ||||||||||||||||| | | || | || |||
Sbjct 16951 AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGG 17010
Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCG-CAGCTAGCCTCGA 153324
| ||| | |||| |||| |||| || | |||||| | ||| | || |
Sbjct 17011 A--GCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATGGTC-A 17067
Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA--ACGGCCGCTTCTTCGCT 153382
| || | | ||| ||||| ||| ||| | || |||||| |||| || ||
Sbjct 17068 GAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG--GCCTCGGGAGA 17125
Query 153383 CTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGAT 153442
|||| | |||||||| || | || || || || |||||||||| ||||| || ||
Sbjct 17126 CTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAAT 17185
Query 153443 GGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTAT-GGGATAGTGATTGCGATCGA 153501
||| || || | ||||||| | || |||| | ||| ||||| ||| ||| |
Sbjct 17186 GGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCGGGAACGGGGTAGTGGTTGACATCAA 17244
Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561
| || ||||| | |||||| || || || | ||| | | | | ||| |||| ||| || |
Sbjct 17245 TGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCGT 17304
Query 153562 AGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621
|| |||| | | ||| | || |||| || |||| || ||||| |
Sbjct 17305 AGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAAGGGAAGCCAAGTTGCAGACAG 17364
Query 153622 CCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681
| ||| |||| ||| ||||| | |||||| | |||||||||| || ||
Sbjct 17365 CGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAG 17424
Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741
|| | || | ||| ||||| ||||| ||| || || ||| | |||||| | ||
Sbjct 17425 TTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGT 17484
Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798
||| |||||| || | |||| ||| | ||| | || | ||| || |
Sbjct 17485 TGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGC---TTCTGGGCCTTGATGG 17541
Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858
|| ||| |||||||| |||||| |||||||| ||| ||||| |||||||
Sbjct 17542 TCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGT 17601
Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGT 153918
||||||| || ||||| || |||| || || ||||| || | ||| ||||||||
Sbjct 17602 AGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCCA------GTCGGCGT 17655
Query 153919 T------GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972
| ||| | |||||||||||| || | |||||| ||| | ||||| || |
Sbjct 17656 TCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGG 17715
Query 153973 CCTTGCAATCCTCCGCGCCCATG----TTGCGTTTCAGATTGA-GCACGCTATAGATGTC 154027
| | |||||| | ||||| ||||| || | | | || | | ||| |||
Sbjct 17716 CACGGACCTCCTCCTTG-CCATGGTTCTTGCG---CAAGTCCATGAACTCGA-AGACGTC 17770
Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATC 154084
|||||||||||| |||| ||||| || | || || |||| || || ||||||||
Sbjct 17771 GGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATC 17830
Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCC 154144
||||| ||| | | ||||| ||||| || | |||||| | ||| | | ||||||
Sbjct 17831 GACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGAGGTGCC 17890
Query 154145 GTTGGT 154150
||||||
Sbjct 17891 GTTGGT 17896
>seq686
Length=266282
Score = 114 bits (126), Expect = 1e-20
Identities = 336/506 (66%), Gaps = 25/506 (5%)
Strand=Plus/Minus
Query 52336 TTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGCCACGCTGGCC 52394
||||||| |||||| | ||||| ||||||||||| | || || | | || | | |||
Sbjct 148984 TTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGA-TGAGAACTCCTCCTTCGCC 148926
Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454
|||| |||| ||||| ||| || ||||| | || || ||| |||||| ||
Sbjct 148925 CAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCC 148866
Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514
||||||| | || | | || | ||||| || ||||| ||| ||||||| | ||
Sbjct 148865 ATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATC 148806
Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT---ACAAGACGCGC 52568
|| || ||||| || || ||||| |||||||| |||||| |||| || | || |
Sbjct 148805 TCCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCAC 148746
Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626
| || || || | | || || |||| ||| || || || || |
Sbjct 148745 -CGCCCCAACAA--GCA---GGTCA-----TTGAGGACATCATCGTTGATGCCGTCAAGA 148697
Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686
| || ||||||| | || | || ||||| || || || ||||||||| | | |
Sbjct 148696 TTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACT 148637
Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGCCA 52745
||| ||||||| ||||| || || || || || |||| |||| |||| | |
Sbjct 148636 TGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGT--CGCTCTTGGCAACGA 148579
Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804
||| || ||| || ||| || || || || ||| | ||||| || |||| |||||
Sbjct 148578 CAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAA 148519
Query 52805 GACCAACTTTTTCGAGAAGCGAGTCG 52830
||||||||| || |||||||| ||||
Sbjct 148518 GACCAACTTCTTTGAGAAGCGTGTCG 148493
>seq356
Length=254992
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||| | || | ||| | | |||| ||||| || || |||||||||||
Sbjct 83727 GCCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCT 83786
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||| || || || | || || || | |||| |||||||| ||||| |||||
Sbjct 83787 CAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 83846
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || || | | || | ||||| | ||||| ||
Sbjct 83847 GATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGAC 83906
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | ||| | ||| || |||||||| || || || || ||||||||
Sbjct 83907 TTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | ||| | |||||||||| ||||||||||| || |
Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || || |||| |||| | ||||| ||||| |||||
Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| || || | | || | |||||| | || || |||
Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACC 84135
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| ||| | ||| || || || || || || || |||||||||||
Sbjct 84136 TCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
>seq863
Length=517823
Score = 89.7 bits (98), Expect = 5e-13
Identities = 116/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518
||||||||| || || |||| |||| |||||||| ||||| || || || || || ||
Sbjct 7414 GTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTT 7355
Query 138519 GTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577
||| ||| || || | ||||| | | |||||||| |||||||||||| | || |
Sbjct 7354 GTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGACGACTCCACCTCAAGGGTGA 7296
Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| || || ||||| || || || || |||||||||
Sbjct 7295 TAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 7258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496256637152880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |