Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq356 138 1e-27 seq863 102 8e-17 seq572 102 8e-17 seq686 98.7 9e-16 seq477 87.8 2e-12 >seq356 Length=254992 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | || ||||| || ||||| |||||||| | Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| ||||| ||| ||||||| |||||||| |||||||| Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| || ||| ||| ||||| ||||| | | |||||| | | || || Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGT-CAATGGTGTCTGAAGATTCAAC 84134 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| |||||||| || || || || ||||||||||| Sbjct 84135 CTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | || || || || || |||||||| |||| || |||||| ||| || Sbjct 83746 ACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCC 83805 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| ||||||||| |||| | |||||||| |||||||| || |||||||||||| | Sbjct 83806 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 83865 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | || | ||||| | ||||||||| | || | ||| || Sbjct 83866 ATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTT 83925 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || |||||||| Sbjct 83926 CCAGTCAGCGTCTTGACGAAGATCTGCAT 83954 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || ||||| ||||| ||| | Sbjct 84184 CCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 84243 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || ||||| ||||||| |||||||| || || || Sbjct 84244 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 84303 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| || ||| ||||| | |||| || || | | |||||| Sbjct 84304 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 84363 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||| | || ||||| || || || || || Sbjct 84364 TCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || ||||| ||||| ||| Sbjct 84470 CCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 84529 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| | || | |||||||||||||| || Sbjct 84530 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 84589 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||| || | |||||| Sbjct 84590 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACC 84649 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 |||| || | || |||||||| Sbjct 84650 TCGAGAGTGATGGTCTTGCCGGT 84672 >seq863 Length=517823 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||| ||| |||||| |||||||| ||||| || |||||||||||| Sbjct 7413 TCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTG 7354 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | ||| || || | ||| | Sbjct 7353 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 7294 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || || || ||||||||| Sbjct 7293 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 7258 >seq572 Length=609512 Score = 102 bits (112), Expect = 8e-17 Identities = 324/491 (66%), Gaps = 11/491 (2%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 |||| || ||||| ||||||||||| ||||| || | | || | |||| |||| | | Sbjct 16771 GGTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATG 16830 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||||| |||||||||| || | ||||||| || | || ||||||||| || | Sbjct 16831 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAA 16890 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTC 146241 | |||||| ||| | ||| ||||| || ||| |||| ||| || | ||||| | Sbjct 16891 CGAGCAAACTGTTGCGCACACCGTGCTCCTTG-ATCTGCTCCTTCAGAGAGTCCCAATCC 16949 Query 146242 CACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGG 146301 || | | || | ||| | || ||| | ||||||| || | | || || | | Sbjct 16950 CAGA---GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATA 17006 Query 146302 GGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAG-TTCGCAGCTAGCTTC 146360 ||| |||||||| || | || || ||||||||| | ||| | | Sbjct 17007 GGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATGGT- 17065 Query 146361 CAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGC 146419 |||||| | ||| |||||||| |||| | | ||||| | || | |||||| Sbjct 17066 CAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGA-GATCACGGGCCTCGGGAG 17124 Query 146420 TGTCGTAGGGGATATCGAGAAGC-ACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCA 146478 ||| | || || ||| || | || || || || |||||||| | |||| |||| Sbjct 17125 ACTCGAAAGGCAT-GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCA 17183 Query 146479 ACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCG 146538 | ||||||||| | |||| ||||| ||| | | | ||| ||||||||| || Sbjct 17184 ATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCA 17243 Query 146539 ATGATCTTGTT 146549 ||||||||||| Sbjct 17244 ATGATCTTGTT 17254 >seq686 Length=266282 Score = 98.7 bits (108), Expect = 9e-16 Identities = 329/509 (65%), Gaps = 16/509 (3%) Strand=Plus/Minus Query 47070 CCCTGCG-TGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCAC 47128 |||||| | |||| ||||| || |||||| |||||| || | || ||| | | Sbjct 148992 CCCTGCCATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTC 148933 Query 47129 TCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT 47188 | ||| | ||| || | || || ||| || ||||| |||||||| || || Sbjct 148932 CTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTT 148873 Query 47189 TGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGA 47248 ||| | || |||| | || | || | ||||| || || || || |||||| Sbjct 148872 TGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGA 148813 Query 47249 GCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AACA 47304 ||| ||||| | ||||| || || |||||| |||||||||| |||| ||| | | Sbjct 148812 GCTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTCTCACCT 148753 Query 47305 CTAGAGTCGATCAAA--AGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGT 47362 | || || | || || || | | | || ||||| | | || ||||| Sbjct 148752 CAAGCACCGCCCCAACAAGCAGGTCAT--------TGAG-GACATCATCGTTGATGCCGT 148702 Query 47363 CGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGC 47422 | |||||| |||||| || | |||||||||||| || | | || |||||| | Sbjct 148701 CAAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTC 148642 Query 47423 GGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTA 47482 | |||||| ||||||| || || || ||||||||||| || || || | Sbjct 148641 CAACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAA 148582 Query 47483 TCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGG 47542 |||| | ||| | | || || ||||| || ||| | ||||| || || | || Sbjct 148581 CGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGG 148522 Query 47543 CAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 |||||||||||| || |||||||| |||| Sbjct 148521 CAAGACCAACTTCTTTGAGAAGCGTGTCG 148493 >seq477 Length=261965 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || |||||| ||||| Sbjct 234213 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 234272 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 234273 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 234332 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || || || ||||| || || || ||| Sbjct 234333 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 234392 Query 127106 ATCTGCA 127112 ||||| Sbjct 234393 --CTGCA 234397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495278246960