Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq356 138 1e-27
seq863 102 8e-17
seq572 102 8e-17
seq686 98.7 9e-16
seq477 87.8 2e-12
>seq356
Length=254992
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| || | ||| | || ||||| || ||||| |||||||| |
Sbjct 83956 CCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGAC 84015
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || ||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct 84016 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 84075
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||| || ||| ||| ||||| ||||| | | |||||| | | || ||
Sbjct 84076 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGT-CAATGGTGTCTGAAGATTCAAC 84134
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | ||| |||||||| || || || || |||||||||||
Sbjct 84135 CTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||| ||| | || || || || || |||||||| |||| || |||||| ||| ||
Sbjct 83746 ACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCC 83805
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
| ||| ||||||||| |||| | |||||||| |||||||| || |||||||||||| |
Sbjct 83806 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 83865
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| || ||| | | || | ||||| | ||||||||| | || | ||| ||
Sbjct 83866 ATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTT 83925
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| || || || || ||||||||
Sbjct 83926 CCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | || ||||| || ||||| ||||| ||| |
Sbjct 84184 CCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 84243
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || || ||||| ||||||| |||||||| || || ||
Sbjct 84244 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 84303
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||| ||| || ||| ||||| | |||| || || | | ||||||
Sbjct 84304 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 84363
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|||| ||| | || ||||| || || || || ||
Sbjct 84364 TCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | |||||||| || ||||| ||||| |||
Sbjct 84470 CCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 84529
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || |||||| | || | |||||||||||||| ||
Sbjct 84530 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 84589
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||| | | |||| ||| || | ||||||
Sbjct 84590 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACC 84649
Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089
|||| || | || ||||||||
Sbjct 84650 TCGAGAGTGATGGTCTTGCCGGT 84672
>seq863
Length=517823
Score = 102 bits (112), Expect = 8e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| ||||| ||| |||||| |||||||| ||||| || ||||||||||||
Sbjct 7413 TCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTG 7354
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||||| | |||| |||||| | ||| || || | ||| |
Sbjct 7353 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 7294
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| ||||| ||||| || || || || |||||||||
Sbjct 7293 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 7258
>seq572
Length=609512
Score = 102 bits (112), Expect = 8e-17
Identities = 324/491 (66%), Gaps = 11/491 (2%)
Strand=Plus/Plus
Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122
|||| || ||||| ||||||||||| ||||| || | | || | |||| |||| | |
Sbjct 16771 GGTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATG 16830
Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182
||||||| |||||||||| || | ||||||| || | || ||||||||| || |
Sbjct 16831 GCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAA 16890
Query 146183 CCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCCCGTAGTTTGGACCAATTC 146241
| |||||| ||| | ||| ||||| || ||| |||| ||| || | ||||| |
Sbjct 16891 CGAGCAAACTGTTGCGCACACCGTGCTCCTTG-ATCTGCTCCTTCAGAGAGTCCCAATCC 16949
Query 146242 CACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGG 146301
|| | | || | ||| | || ||| | ||||||| || | | || || | |
Sbjct 16950 CAGA---GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATA 17006
Query 146302 GGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAG-TTCGCAGCTAGCTTC 146360
||| |||||||| || | || || ||||||||| | ||| | |
Sbjct 17007 GGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGACATGGT- 17065
Query 146361 CAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTC-CTGGCCTCCTCGC 146419
|||||| | ||| |||||||| |||| | | ||||| | || | ||||||
Sbjct 17066 CAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGA-GATCACGGGCCTCGGGAG 17124
Query 146420 TGTCGTAGGGGATATCGAGAAGC-ACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCA 146478
||| | || || ||| || | || || || || |||||||| | |||| ||||
Sbjct 17125 ACTCGAAAGGCAT-GCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCA 17183
Query 146479 ACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCG 146538
| ||||||||| | |||| ||||| ||| | | | ||| ||||||||| ||
Sbjct 17184 ATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGGGAACGGGGTAGTGGTTGACATCA 17243
Query 146539 ATGATCTTGTT 146549
|||||||||||
Sbjct 17244 ATGATCTTGTT 17254
>seq686
Length=266282
Score = 98.7 bits (108), Expect = 9e-16
Identities = 329/509 (65%), Gaps = 16/509 (3%)
Strand=Plus/Minus
Query 47070 CCCTGCG-TGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCAC 47128
|||||| | |||| ||||| || |||||| |||||| || | || ||| | |
Sbjct 148992 CCCTGCCATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTC 148933
Query 47129 TCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT 47188
| ||| | ||| || | || || ||| || ||||| |||||||| || ||
Sbjct 148932 CTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTT 148873
Query 47189 TGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGA 47248
||| | || |||| | || | || | ||||| || || || || ||||||
Sbjct 148872 TGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGA 148813
Query 47249 GCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AACA 47304
||| ||||| | ||||| || || |||||| |||||||||| |||| ||| | |
Sbjct 148812 GCTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTCTCACCT 148753
Query 47305 CTAGAGTCGATCAAA--AGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGT 47362
| || || | || || || | | | || ||||| | | || |||||
Sbjct 148752 CAAGCACCGCCCCAACAAGCAGGTCAT--------TGAG-GACATCATCGTTGATGCCGT 148702
Query 47363 CGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGC 47422
| |||||| |||||| || | |||||||||||| || | | || |||||| |
Sbjct 148701 CAAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTGCGCTCTTCTCGGCATGAACTC 148642
Query 47423 GGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTA 47482
| |||||| ||||||| || || || ||||||||||| || || || |
Sbjct 148641 CAACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAA 148582
Query 47483 TCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGG 47542
|||| | ||| | | || || ||||| || ||| | ||||| || || | ||
Sbjct 148581 CGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGG 148522
Query 47543 CAAGACCAACTTTTTCGAGAAGCGCGTCG 47571
|||||||||||| || |||||||| ||||
Sbjct 148521 CAAGACCAACTTCTTTGAGAAGCGTGTCG 148493
>seq477
Length=261965
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || |||||| |||||
Sbjct 234213 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 234272
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 234273 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 234332
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | |||||| || | ||| | || || || ||||| || || || |||
Sbjct 234333 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 234392
Query 127106 ATCTGCA 127112
|||||
Sbjct 234393 --CTGCA 234397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475495278246960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |