Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq572 150 2e-31 seq686 123 3e-23 seq95 105 8e-18 >seq572 Length=609512 Score = 150 bits (166), Expect = 2e-31 Identities = 1067/1702 (63%), Gaps = 73/1702 (4%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| ||||||||||| || |||||||| | | ||||| || Sbjct 16467 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTG 16526 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | ||| || | |||| || ||| | ||||| || ||||||||| Sbjct 16527 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAG 16586 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734 || || || || ||||| | || || | | || | || ||||| || || Sbjct 16587 GCACCACGGTCGGCAGCCATCTGAA---CAACGGTGCGCTGGGATATCTCCCAGACGGTC 16643 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| || ||| | ||| | || || | ||| || |||||||| ||| | Sbjct 16644 TTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA---ACCGTTC 16700 Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 | | | |||| | | |||||| | | ||||| || || || | |||||||| | Sbjct 16701 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 16760 Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907 | | ||| | || ||||| ||||| || || || || | | ||||| Sbjct 16761 AACAACCAGGGG----TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGAT 16816 Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 ||||| ||||||||||| |||||||| ||||| |||||||| || | |||||||| || Sbjct 16817 GTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 16876 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027 |||||||| || | ||| | |||||||| | ||| | || | || | ||||| || Sbjct 16877 AGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 16936 Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC 116087 | |||||| || || | | || | | |||||| || ||||||||||||| Sbjct 16937 AGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACC 16996 Query 116088 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 116147 ||||| || || ||||| | || || | |||||| ||| |||| | || Sbjct 16997 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCA--GCTGA 17054 Query 116148 GCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 116205 | | | | || || ||||| || || ||||| || || || | | | Sbjct 17055 ACAGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG 17114 Query 116206 GCCTCGTCGGAATC-AAACGC--GAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 |||||| || || ||| || | || || | || |||| || ||||| ||| Sbjct 17115 GCCTCGGGAGACTCGAAAGGCATGCGAAGG---GCGAGGAAAGCATCAGCAAGACCCTGG 17171 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGA 116319 |||||||| ||||| ||||| || | ||| || || ||||| ||| ||||| Sbjct 17172 ACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGG 17228 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || || ||| || | | | || | || || |||| |||| || ||| Sbjct 17229 TAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGA 17288 Query 116380 AGCTTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 ||||| | | | || | | | || | | ||| || | | || || || | Sbjct 17289 AGCTTCTGGAAGTCGTAGACACCATCG-TTGTAGTCA---ACGAAGGTGGGCAGAGCAAG 17344 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || |||| || || |||| | ||| || | |||||| || || || || || Sbjct 17345 GGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCA 17404 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 | || || || || || || | |||||| || || ||| ||| ||||| Sbjct 17405 GAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 17464 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614 |||||| ||||| | || | || ||||| || || | || ||| || || | ||| | Sbjct 17465 CTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAG 17524 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGT 116668 | || | | || | ||| ||| || |||| |||| ||||||||| || Sbjct 17525 CTTCTGGGCCTTG----ATGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTCTCGT 17577 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 | | |||||| ||||| || || ||| || | || || || || || || || Sbjct 17578 ACAAGGCCTCGAACTCCTC-GCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCAC 17636 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 | ||| | ||| | | || ||| || | ||||||||| || || ||||||||||| Sbjct 17637 ATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGA 17696 Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847 || ||| || || || || | || || | || || || ||||| |||| Sbjct 17697 GCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATG 17756 Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTG 116901 || || | || || |||||||| || || ||||| | |||| | || |||| Sbjct 17757 AACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTG 17816 Query 116902 CGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 ||| |||| | || || | || || |||||| || |||||||| |||||| Sbjct 17817 ---TTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATG 17873 Query 116962 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGG 117021 | ||| | || ||| || || || |||| || |||| | || | ||| Sbjct 17874 ACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGA 17933 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 || | |||||| || || ||| ||| ||||| ||||| | |||| || || Sbjct 17934 GCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCG 17993 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141 ||||| || || || ||||| |||| | ||| ||||||||| |||| || | Sbjct 17994 TAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCAC 18053 Query 117142 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACA 117199 || ||||||||||||||||| || || | |||||| ||| | | |||| ||||| Sbjct 18054 TGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACA 18111 Query 117200 TCTTATCGTAGGTCTCCAAGAC 117221 | | ||||||||| | ||| Sbjct 18112 TGAGGTTGTAGGTCTCGATGAC 18133 >seq686 Length=266282 Score = 123 bits (136), Expect = 3e-23 Identities = 306/462 (66%), Gaps = 22/462 (5%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| |||| |||||||| |||||||| ||||| || | ||| ||| |||||||| Sbjct 148485 GTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 148544 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| || || | | |||| | || | | ||||| Sbjct 148545 GAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AGGAGG 148602 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||||||||||| |||| | |||||||| |||| || Sbjct 148603 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 148662 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || || |||| ||| |||||| | || || || | |||| | Sbjct 148663 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 148722 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG---- 127520 | ||| || | | | ||| | ||||| ||||| | | || Sbjct 148723 TCAATGA--------CCTGCT-TGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAG 148773 Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 |||| || ||| ||||||||||||||||||||||| || || |||||| |||||| Sbjct 148774 GCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCA 148833 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | ||| || || | ||| | || ||||||||| Sbjct 148834 GGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATA 148893 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 ||||| ||| || || |||| ||||||| ||| |||||| Sbjct 148894 CCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 148935 >seq95 Length=35920 Score = 105 bits (116), Expect = 8e-18 Identities = 273/409 (67%), Gaps = 13/409 (3%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || ||||| || || | || || | ||||||||| || | ||| || | ||| Sbjct 25787 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 25728 Query 12765 ATGACAACGA--TGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 | |||||| | ||| | || | | | ||| || |||||||| ||||||| || || | Sbjct 25727 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 25670 Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 12878 ||| ||| || || || || | ||| | |||| | ||| ||| | ||| Sbjct 25669 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 25611 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938 | |||||| || || || ||||| | ||| || || | | | |||||| | |||| Sbjct 25610 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTTGCAAAC 25551 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGG 12996 | ||||||||||| | ||||||||| ||||||||||| ||||| | || | || | Sbjct 25550 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 25491 Query 12997 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056 | | || |||||| || || || || ||| |||| ||| || | ||||| | Sbjct 25490 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAATGTCTTAC 25433 Query 13057 CCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || ||||| || || |||| ||| ||||| |||||| | || || Sbjct 25432 CGGTTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCC 25384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500075647640