Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq572 150 2e-31
seq686 123 3e-23
seq95 105 8e-18
>seq572
Length=609512
Score = 150 bits (166), Expect = 2e-31
Identities = 1067/1702 (63%), Gaps = 73/1702 (4%)
Strand=Plus/Plus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
|| ||||||||||| ||||||||||| || |||||||| | | ||||| ||
Sbjct 16467 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTG 16526
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677
| |||| | ||| || | |||| || ||| | ||||| || |||||||||
Sbjct 16527 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAAG 16586
Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734
|| || || || ||||| | || || | | || | || ||||| || ||
Sbjct 16587 GCACCACGGTCGGCAGCCATCTGAA---CAACGGTGCGCTGGGATATCTCCCAGACGGTC 16643
Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794
|||| || ||| | ||| | || || | ||| || |||||||| ||| |
Sbjct 16644 TTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA---ACCGTTC 16700
Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851
| | | |||| | | |||||| | | ||||| || || || | |||||||| |
Sbjct 16701 TCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTC 16760
Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907
| | ||| | || ||||| ||||| || || || || | | |||||
Sbjct 16761 AACAACCAGGGG----TTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGAT 16816
Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967
||||| ||||||||||| |||||||| ||||| |||||||| || | |||||||| ||
Sbjct 16817 GTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGT 16876
Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027
|||||||| || | ||| | |||||||| | ||| | || | || | ||||| ||
Sbjct 16877 AGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTCAG 16936
Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC 116087
| |||||| || || | | || | | |||||| || |||||||||||||
Sbjct 16937 AGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACC 16996
Query 116088 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 116147
||||| || || ||||| | || || | |||||| ||| |||| | ||
Sbjct 16997 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCA--GCTGA 17054
Query 116148 GCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 116205
| | | | || || ||||| || || ||||| || || || | | |
Sbjct 17055 ACAGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGG 17114
Query 116206 GCCTCGTCGGAATC-AAACGC--GAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262
|||||| || || ||| || | || || | || |||| || ||||| |||
Sbjct 17115 GCCTCGGGAGACTCGAAAGGCATGCGAAGG---GCGAGGAAAGCATCAGCAAGACCCTGG 17171
Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGA 116319
|||||||| ||||| ||||| || | ||| || || ||||| ||| |||||
Sbjct 17172 ACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC---CTCGGGAACGGGG 17228
Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379
|| || ||| || | | | || | || || |||| |||| || |||
Sbjct 17229 TAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGA 17288
Query 116380 AGCTTTTCGTAATC----AAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435
||||| | | | || | | | || | | ||| || | | || || || |
Sbjct 17289 AGCTTCTGGAAGTCGTAGACACCATCG-TTGTAGTCA---ACGAAGGTGGGCAGAGCAAG 17344
Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495
|| |||| || || |||| | ||| || | |||||| || || || || ||
Sbjct 17345 GGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCA 17404
Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555
| || || || || || || | |||||| || || ||| ||| |||||
Sbjct 17405 GAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 17464
Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614
|||||| ||||| | || | || ||||| || || | || ||| || || | ||| |
Sbjct 17465 CTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAG 17524
Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGT 116668
| || | | || | ||| ||| || |||| |||| ||||||||| ||
Sbjct 17525 CTTCTGGGCCTTG----ATGGTCTTG---CGACCCTTGCCCTCGCGCTCGTACTTCTCGT 17577
Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727
| | |||||| ||||| || || ||| || | || || || || || || ||
Sbjct 17578 ACAAGGCCTCGAACTCCTC-GCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCAC 17636
Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787
| ||| | ||| | | || ||| || | ||||||||| || || |||||||||||
Sbjct 17637 ATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGA 17696
Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847
|| ||| || || || || | || || | || || || ||||| ||||
Sbjct 17697 GCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATG 17756
Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTG 116901
|| || | || || |||||||| || || ||||| | |||| | || ||||
Sbjct 17757 AACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTG 17816
Query 116902 CGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961
||| |||| | || || | || || |||||| || |||||||| ||||||
Sbjct 17817 ---TTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATG 17873
Query 116962 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGG 117021
| ||| | || ||| || || || |||| || |||| | || | |||
Sbjct 17874 ACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGA 17933
Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081
|| | |||||| || || ||| ||| ||||| ||||| | |||| || ||
Sbjct 17934 GCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCG 17993
Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141
||||| || || || ||||| |||| | ||| ||||||||| |||| || |
Sbjct 17994 TAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCAC 18053
Query 117142 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACA 117199
|| ||||||||||||||||| || || | |||||| ||| | | |||| |||||
Sbjct 18054 TGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACA 18111
Query 117200 TCTTATCGTAGGTCTCCAAGAC 117221
| | ||||||||| | |||
Sbjct 18112 TGAGGTTGTAGGTCTCGATGAC 18133
>seq686
Length=266282
Score = 123 bits (136), Expect = 3e-23
Identities = 306/462 (66%), Gaps = 22/462 (5%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| |||| |||||||| |||||||| ||||| || | ||| ||| ||||||||
Sbjct 148485 GTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 148544
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| || || ||||| || || | | |||| | || | | |||||
Sbjct 148545 GAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AGGAGG 148602
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
|| || | ||| |||||||||||| |||| | |||||||| |||| ||
Sbjct 148603 CGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCG 148662
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || || || || || |||| ||| |||||| | || || || | |||| |
Sbjct 148663 CAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCC 148722
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG---- 127520
| ||| || | | | ||| | ||||| ||||| | | ||
Sbjct 148723 TCAATGA--------CCTGCT-TGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAG 148773
Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
|||| || ||| ||||||||||||||||||||||| || || |||||| ||||||
Sbjct 148774 GCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCA 148833
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| |||||||| | ||| || || | ||| | || |||||||||
Sbjct 148834 GGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATA 148893
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681
||||| ||| || || |||| ||||||| ||| ||||||
Sbjct 148894 CCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAG 148935
>seq95
Length=35920
Score = 105 bits (116), Expect = 8e-18
Identities = 273/409 (67%), Gaps = 13/409 (3%)
Strand=Plus/Minus
Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764
|| || ||||| || || | || || | ||||||||| || | ||| || | |||
Sbjct 25787 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 25728
Query 12765 ATGACAACGA--TGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822
| |||||| | ||| | || | | | ||| || |||||||| ||||||| || || |
Sbjct 25727 AGGACAACAACCTGCTC--CTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 25670
Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTGCTT-ACCG 12878
||| ||| || || || || | ||| | |||| | ||| ||| | |||
Sbjct 25669 GAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTC-CTGTCTTGATCGACCA 25611
Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938
| |||||| || || || ||||| | ||| || || | | | |||||| | ||||
Sbjct 25610 ATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTTGCAAAC 25551
Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGG 12996
| ||||||||||| | ||||||||| ||||||||||| ||||| | || | || |
Sbjct 25550 AGGTCTCGCACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGGAACCGCTG 25491
Query 12997 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056
| | || |||||| || || || || ||| |||| ||| || | ||||| |
Sbjct 25490 ACGCT--GAAGAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAATGTCTTAC 25433
Query 13057 CCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105
| || ||||| || || |||| ||| ||||| |||||| | || ||
Sbjct 25432 CGGTTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCC 25384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613500075647640
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