Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq686 154 2e-32
seq572 138 2e-27
seq230 84.2 3e-11
>seq686
Length=266282
Score = 154 bits (170), Expect = 2e-32
Identities = 168/222 (76%), Gaps = 1/222 (0%)
Strand=Plus/Plus
Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974
||| |||||| ||||||||| ||| || |||||||| || ||||||| ||||||||| |
Sbjct 148763 ACAAGAGGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGA 148822
Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034
| | || || ||||||| |||||| ||||||||||| |||| |||||||||||||
Sbjct 148823 AGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGC 148882
Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094
| || ||||| ||||| || || ||||| || || || | || | || |||| |||
Sbjct 148883 TGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCT 148942
Query 160095 TGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA 160136
|| | ||||| | |||||| ||||||||| ||||||
Sbjct 148943 CATCGCTGATCCACTTCAGGGCCCAGTCAGCCTTC-TTGCGA 148983
>seq572
Length=609512
Score = 138 bits (152), Expect = 2e-27
Identities = 455/686 (66%), Gaps = 21/686 (3%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTAC 203893
||||| || || ||||||||||| | | | | || |||||| | | ||| ||||||
Sbjct 16422 TCTTGGTCGACGGTGAACTGAATAGGGG---CAGAAGCTGCCTGCGTACGCAGGTAGTAC 16478
Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953
||||| ||||| || || || ||| ||| | |||||| | | |||| ||
Sbjct 16479 ATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTGCCCATT 16538
Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012
| ||||| |||||| ||||| || |||||| ||||||||||| ||| || || ||
Sbjct 16539 GTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAA-GGCACCACGGTC 16597
Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072
|| ||||| | | || ||| ||| || |||||||| || |||||| ||| | |
Sbjct 16598 GGCAGCCATCTGAACAACGGTGCGCTGGGATATCTCCCAGACGGTCTTGTACAGAGCCTT 16657
Query 204073 GGTGTGTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC 204130
| | | || | || || | || ||| || || ||||| ||||| || | |
Sbjct 16658 GACCTCA-GCGGGA-ATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGG 16715
Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190
|| || | | || ||||| ||||| || || ||| || || ||||||
Sbjct 16716 TTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTA 16775
Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250
| | ||| || || |||| || || | || | | | |||| |||| |||| |||
Sbjct 16776 ACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGCTCG 16835
Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310
|| |||||||||||| || ||||| | ||| ||| || ||||||||||| | ||||
Sbjct 16836 AAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGC 16895
Query 204311 AGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCAT 204369
| |||||||||||||| | | || |||| |||||||||| ||| || |
Sbjct 16896 AAACTGTTGCGCACACCGTGCTCCTTGA-TCTGCTCCTTCAGAGAGTCCCAATCCCAGAG 16954
Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429
|| ||| || || |||||||||| |||| | ||| || || || ||| |||
Sbjct 16955 GTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAGCC 17014
Query 204430 CTTGTACGTCGGATAAGGCTG--ATCCTCTTCTGCCAGCTTGCAC-GAGGCGGCCATGGC 204486
|| |||||| ||| ||| || ||||| | |||||| || || || || || ||
Sbjct 17015 CTCGTACGT-GGAGTAGG-TGCCCTCCTCCTTGGCCAGC-TGAACAGACATGGTCAGAGC 17071
Query 204487 GTGATAGTACATGGTCTCAAAGATCT 204512
| ||| |||||||| |||||||
Sbjct 17072 AGCGTGGTAGATGGTCTCGAAGATCT 17097
>seq230
Length=716270
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/189 (72%), Gaps = 10/189 (5%)
Strand=Plus/Plus
Query 116102 GTTTTACCAAAGATC-TGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAGCTACG 116160
||| ||||| | || ||| |||||||| | ||||| ||||| ||| |||| |||||||
Sbjct 621900 GTTGTACCAGCGGTCCTGC-GACATGGGACTCGGCGTGCCCTTCAACATTGCCAGCTACG 621958
Query 116161 CGCTACTGACTCATATTATGGCACATTTGGCG---GACCTGGAAGTCGGAGAATTGATAC 116217
|||| ||||| || || || || | |||| ||||||| | ||| | | |
Sbjct 621959 CGCTCCTGACGCACATGATTGCGC---GGGCGTGCGACCTGGTACCGGGAAGCCTCACGC 622015
Query 116218 ACTCTATTGGGGACGCGCACATCTACACCAACCATGTGG-CGCAGCTCGAGCTGCAGGTG 116276
|| || || ||||||||| ||||| | |||| |||| ||| |||| || ||||| ||
Sbjct 622016 ACGTCATGGGCGACGCGCACGTCTACGCGGACCACGTGGACGC-GCTCAAGGTGCAGCTG 622074
Query 116277 AAGCGGGAG 116285
||||||||
Sbjct 622075 GAGCGGGAG 622083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795145966260240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |