Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq686 154 2e-32 seq572 138 2e-27 seq230 84.2 3e-11 >seq686 Length=266282 Score = 154 bits (170), Expect = 2e-32 Identities = 168/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 ||| |||||| ||||||||| ||| || |||||||| || ||||||| ||||||||| | Sbjct 148763 ACAAGAGGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGA 148822 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | | || || ||||||| |||||| ||||||||||| |||| ||||||||||||| Sbjct 148823 AGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGC 148882 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094 | || ||||| ||||| || || ||||| || || || | || | || |||| ||| Sbjct 148883 TGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCT 148942 Query 160095 TGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA 160136 || | ||||| | |||||| ||||||||| |||||| Sbjct 148943 CATCGCTGATCCACTTCAGGGCCCAGTCAGCCTTC-TTGCGA 148983 >seq572 Length=609512 Score = 138 bits (152), Expect = 2e-27 Identities = 455/686 (66%), Gaps = 21/686 (3%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTAC 203893 ||||| || || ||||||||||| | | | | || |||||| | | ||| |||||| Sbjct 16422 TCTTGGTCGACGGTGAACTGAATAGGGG---CAGAAGCTGCCTGCGTACGCAGGTAGTAC 16478 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 ||||| ||||| || || || ||| ||| | |||||| | | |||| || Sbjct 16479 ATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATACTGGTGATCTTGCCCATT 16538 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATC 204012 | ||||| |||||| ||||| || |||||| ||||||||||| ||| || || || Sbjct 16539 GTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGGTCGATGAA-GGCACCACGGTC 16597 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| | | || ||| ||| || |||||||| || |||||| ||| | | Sbjct 16598 GGCAGCCATCTGAACAACGGTGCGCTGGGATATCTCCCAGACGGTCTTGTACAGAGCCTT 16657 Query 204073 GGTGTGTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC 204130 | | | || | || || | || ||| || || ||||| ||||| || | | Sbjct 16658 GACCTCA-GCGGGA-ATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGG 16715 Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || || | | || ||||| ||||| || || ||| || || |||||| Sbjct 16716 TTCTTCATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTA 16775 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | | ||| || || |||| || || | || | | | |||| |||| |||| ||| Sbjct 16776 ACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGCTCG 16835 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || |||||||||||| || ||||| | ||| ||| || ||||||||||| | |||| Sbjct 16836 AAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGC 16895 Query 204311 AGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCAT 204369 | |||||||||||||| | | || |||| |||||||||| ||| || | Sbjct 16896 AAACTGTTGCGCACACCGTGCTCCTTGA-TCTGCTCCTTCAGAGAGTCCCAATCCCAGAG 16954 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429 || ||| || || |||||||||| |||| | ||| || || || ||| ||| Sbjct 16955 GTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAGCC 17014 Query 204430 CTTGTACGTCGGATAAGGCTG--ATCCTCTTCTGCCAGCTTGCAC-GAGGCGGCCATGGC 204486 || |||||| ||| ||| || ||||| | |||||| || || || || || || Sbjct 17015 CTCGTACGT-GGAGTAGG-TGCCCTCCTCCTTGGCCAGC-TGAACAGACATGGTCAGAGC 17071 Query 204487 GTGATAGTACATGGTCTCAAAGATCT 204512 | ||| |||||||| ||||||| Sbjct 17072 AGCGTGGTAGATGGTCTCGAAGATCT 17097 >seq230 Length=716270 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/189 (72%), Gaps = 10/189 (5%) Strand=Plus/Plus Query 116102 GTTTTACCAAAGATC-TGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAGCTACG 116160 ||| ||||| | || ||| |||||||| | ||||| ||||| ||| |||| ||||||| Sbjct 621900 GTTGTACCAGCGGTCCTGC-GACATGGGACTCGGCGTGCCCTTCAACATTGCCAGCTACG 621958 Query 116161 CGCTACTGACTCATATTATGGCACATTTGGCG---GACCTGGAAGTCGGAGAATTGATAC 116217 |||| ||||| || || || || | |||| ||||||| | ||| | | | Sbjct 621959 CGCTCCTGACGCACATGATTGCGC---GGGCGTGCGACCTGGTACCGGGAAGCCTCACGC 622015 Query 116218 ACTCTATTGGGGACGCGCACATCTACACCAACCATGTGG-CGCAGCTCGAGCTGCAGGTG 116276 || || || ||||||||| ||||| | |||| |||| ||| |||| || ||||| || Sbjct 622016 ACGTCATGGGCGACGCGCACGTCTACGCGGACCACGTGGACGC-GCTCAAGGTGCAGCTG 622074 Query 116277 AAGCGGGAG 116285 |||||||| Sbjct 622075 GAGCGGGAG 622083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795145966260240