Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq356 141 2e-28
seq477 86.0 1e-11
>seq356
Length=254992
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| || ||||| || || ||||| |||| |||||||| ||||||
Sbjct 83734 CGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTG 83793
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| ||||||||| |||||||| |||||||||||||| ||| || ||
Sbjct 83794 CGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCC 83853
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||||||| || | ||||| | || || || ||||||
Sbjct 83854 TCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAAC 83913
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || || || || || || || ||
Sbjct 83914 GTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTG 83951
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| || || ||||| |||||||| || | |||||| || | || ||
Sbjct 83962 CGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTG 84021
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||||||||||||||| | ||||||||||| ||| ||| ||
Sbjct 84022 CGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCC 84081
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || ||||| ||| ||| || | |||||||| | ||| || || | |
Sbjct 84082 TCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGC 84141
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || || || || || ||||| ||
Sbjct 84142 GTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTG 84179
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||||||||| |||||||| || | ||||||||| | || ||
Sbjct 84190 CGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 84249
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || || ||||| || || ||||| | |||||||||||| || || ||
Sbjct 84250 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCC 84309
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| || |||| || || | | || || || |
Sbjct 84310 TCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACCTCGAGG 84369
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617
||||| ||||| || ||||| || || ||
Sbjct 84370 GTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398
Score = 93.3 bits (102), Expect = 1e-13
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | |||||| || |||||||| || | ||||||||| | | ||
Sbjct 84476 CGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTG 84535
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || ||||| |||||||||||||| || || || ||
Sbjct 84536 CGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCC 84595
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||||||| |||| ||| || | | || || || |
Sbjct 84596 TCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACCTCGAGA 84655
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 84656 GTGATGGTCTTGCCGGTGA 84674
>seq477
Length=261965
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| | | || | ||||| || |||||||| || |||||||
Sbjct 234211 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 234270
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| || ||||||||||| || || || || ||||| ||||| ||| || |
Sbjct 234271 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 234330
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||| | | || || || | || || ||||||||||| || || ||||| |
Sbjct 234331 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 234390
Query 199620 AA 199621
||
Sbjct 234391 AA 234392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178907567517243
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |