Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq356 141 2e-28 seq477 86.0 1e-11 >seq356 Length=254992 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || ||||| || || ||||| |||| |||||||| |||||| Sbjct 83734 CGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTG 83793 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||||||| |||||||| |||||||||||||| ||| || || Sbjct 83794 CGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCC 83853 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | ||||| | || || || |||||| Sbjct 83854 TCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAAC 83913 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || || || || Sbjct 83914 GTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTG 83951 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || ||||| |||||||| || | |||||| || | || || Sbjct 83962 CGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTG 84021 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||||||||||||||| | ||||||||||| ||| ||| || Sbjct 84022 CGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCC 84081 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| || | |||||||| | ||| || || | | Sbjct 84082 TCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGC 84141 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || ||||| || Sbjct 84142 GTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTG 84179 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| |||||||| || | ||||||||| | || || Sbjct 84190 CGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 84249 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || || ||||| | |||||||||||| || || || Sbjct 84250 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCC 84309 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| || || | | || || || | Sbjct 84310 TCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACCTCGAGG 84369 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || ||||| || || || Sbjct 84370 GTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||| || |||||||| || | ||||||||| | | || Sbjct 84476 CGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTG 84535 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || ||||| |||||||||||||| || || || || Sbjct 84536 CGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCC 84595 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| ||| || | | || || || | Sbjct 84596 TCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACCTCGAGA 84655 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 84656 GTGATGGTCTTGCCGGTGA 84674 >seq477 Length=261965 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| || ||||||| Sbjct 234211 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 234270 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || || || || ||||| ||||| ||| || | Sbjct 234271 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 234330 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | || || ||||||||||| || || ||||| | Sbjct 234331 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 234390 Query 199620 AA 199621 || Sbjct 234391 AA 234392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178907567517243