Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq863 123 3e-23
seq477 122 1e-22
seq356 116 4e-21
>seq863
Length=517823
Score = 123 bits (136), Expect = 3e-23
Identities = 130/171 (76%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 46423 GGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGC 46482
||| || ||||| |||| ||||||||||| |||||||| |||| |||||||||||||
Sbjct 7429 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGG 7370
Query 46483 CGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTC 46542
|| | || |||||||||| |||||| ||||| | | | |||||| ||| ||
Sbjct 7369 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTC 7310
Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || | ||||| || ||||||||||| || || || ||||| |||||
Sbjct 7309 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 7259
>seq477
Length=261965
Score = 122 bits (134), Expect = 1e-22
Identities = 144/194 (74%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 46392 GCAATGT-ACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGC 46450
|||||| ||| |||| ||||| ||||||||||| || ||||| | || || ||||||
Sbjct 234198 GCAATGAGACTAACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 234257
Query 46451 TTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510
||||| ||||| |||| |||||||||||| | || | || |||||||||| ||||||
Sbjct 234258 TTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 234317
Query 46511 TTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC 46570
||||| | | | ||||||| || || || || | || ||||| || ||||||
Sbjct 234318 GACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTC 234377
Query 46571 AGCGTTTTAACAAA 46584
|| || || || ||
Sbjct 234378 AGGGTCTTCACGAA 234391
>seq356
Length=254992
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| || ||||||| || |||||| || || ||||| || || || ||||| |
Sbjct 83968 CGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCA 84027
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || |||||||| |||||||| ||||||||||||||||||| || | | ||||||
Sbjct 84028 TCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTA 84087
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|| ||||||| ||||| ||| | | | ||||| ||||| || || | ||| ||
Sbjct 84088 TCTTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAAT 84146
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||| || || || || || || || |||||
Sbjct 84147 CGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || ||||| ||||||||||||||| | |||||| | || ||
Sbjct 83746 ACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCC 83805
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| |||||| || ||||| || | ||||||||||||| || | | |||||||||| |
Sbjct 83806 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 83865
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||| | | | | |||||| || || || |||| ||| || || ||
Sbjct 83866 ATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTT 83925
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||||||| || || ||||| |||||
Sbjct 83926 CCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
Score = 100 bits (110), Expect = 3e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||||||||| || ||||| |||| |||||||||||||| |||||
Sbjct 84505 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 84564
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
|| | |||||||| |||| || | || |||||||||| ||||||
Sbjct 84565 AATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 84612
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||||||||| || ||||| | || || || |||||||| || ||
Sbjct 84219 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 84278
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | || |||||| ||| |||||| ||||| |
Sbjct 84279 GATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTTGACATT 84338
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || || || || || || | |||||||| ||||| || ||||| || ||
Sbjct 84339 GTCGATAGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565231836169080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |