Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq686 154 1e-32
seq356 127 2e-24
seq477 105 7e-18
>seq686
Length=266282
Score = 154 bits (170), Expect = 1e-32
Identities = 200/276 (72%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||||||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 149096 GTAGGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 149155
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| || |||||| ||||| || || | ||| |||||||| || ||
Sbjct 149156 GCCGTAGAAGCAGCGAGCCTCGGGGACCTGGACCTCGCCGGAGAAGCGCTCGACGAGGTT 149215
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
||||||||||| ||||| |||||||| ||||| || | ||| |||||| |
Sbjct 149216 CTCGTTGACGATACCGTCCGATGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTACTT 149275
Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | |||| || | | ||||||| | |||||||| || || | ||||||
Sbjct 149276 CTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTC 149335
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| || || |||||||| || ||||||||
Sbjct 149336 GGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 149371
Score = 138 bits (152), Expect = 1e-27
Identities = 322/480 (67%), Gaps = 8/480 (2%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
|||||||| || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 148501 TTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 148560
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | |||||| |||| | | || |||| || || | |||||| ||||||||
Sbjct 148561 GAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAGGCGGTCGGCAACGAACTCA 148620
Query 132745 ATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGT 132803
||||| ||| ||| | | | || | || || ||| |||| ||||| || || ||
Sbjct 148621 ATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCAG-GGCAGAGCCTCAGT 148679
Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863
||| || ||||| || ||| || || || ||| ||| || | | | | |
Sbjct 148680 GAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCCTCAATGACCTGCTTGTT 148739
Query 132864 CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTC 132923
|| || ||| | || | ||| | ||| ||||||||| || | ||||||||
Sbjct 148740 GGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAGTCGGTGTGAAGACCCTCGTC 148799
Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983
| ||| ||||| |||||| ||| |||| || |||||||| || || || ||||||||
Sbjct 148800 ACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCA 148859
Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043
||| |||| ||| ||| || ||||||| ||||| || || || || || |||||
Sbjct 148860 AAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAG 148919
Query 133044 GCGCTCGCCGAACGTGG-CTTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
|||| | |||| | || |||| | ||| |||||| ||| ||||| || |||||
Sbjct 148920 ACGCTGGGCGAAGGAGGAGTTCTCATCGCT---GATCCACTTCAGGGCCCAGTCAGCCTT 148976
>seq356
Length=254992
Score = 127 bits (140), Expect = 2e-24
Identities = 146/194 (75%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| |||||||| |||| |||||| || |||| | | | | |||| | ||
Sbjct 84674 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATCGATAACG-TGAAG 84616
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| |||| ||||| ||||| || ||| |||| || ||||| ||||||| ||| |||
Sbjct 84615 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 84556
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || |||| ||||||||| |||||||||||| || ||||| | || ||
Sbjct 84555 AAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTC 84496
Query 38445 CATTTGGTGCTGCG 38458
|| ||||| || ||
Sbjct 84495 CACTTGGTTCTCCG 84482
>seq477
Length=261965
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || |||||| |
Sbjct 234391 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 234332
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||| ||||| ||
Sbjct 234331 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 234272
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| |||
Sbjct 234271 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 234212
Query 38433 G 38433
|
Sbjct 234211 G 234211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500166991743360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |