Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq686 154 1e-32 seq356 127 2e-24 seq477 105 7e-18 >seq686 Length=266282 Score = 154 bits (170), Expect = 1e-32 Identities = 200/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 149096 GTAGGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAA 149155 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || |||||| ||||| || || | ||| |||||||| || || Sbjct 149156 GCCGTAGAAGCAGCGAGCCTCGGGGACCTGGACCTCGCCGGAGAAGCGCTCGACGAGGTT 149215 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||| ||||| |||||||| ||||| || | ||| |||||| | Sbjct 149216 CTCGTTGACGATACCGTCCGATGCGGCGAAGAAGGCAAGAATGTGAGAGATGAAGTACTT 149275 Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||| || | | ||||||| | |||||||| || || | |||||| Sbjct 149276 CTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTC 149335 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || |||||||| || |||||||| Sbjct 149336 GGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 149371 Score = 138 bits (152), Expect = 1e-27 Identities = 322/480 (67%), Gaps = 8/480 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 148501 TTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 148560 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||| |||| | | || |||| || || | |||||| |||||||| Sbjct 148561 GAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAGGCGGTCGGCAACGAACTCA 148620 Query 132745 ATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGT 132803 ||||| ||| ||| | | | || | || || ||| |||| ||||| || || || Sbjct 148621 ATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCAG-GGCAGAGCCTCAGT 148679 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863 ||| || ||||| || ||| || || || ||| ||| || | | | | | Sbjct 148680 GAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTCCTCAATGACCTGCTTGTT 148739 Query 132864 CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTC 132923 || || ||| | || | ||| | ||| ||||||||| || | |||||||| Sbjct 148740 GGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAGTCGGTGTGAAGACCCTCGTC 148799 Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983 | ||| ||||| |||||| ||| |||| || |||||||| || || || |||||||| Sbjct 148800 ACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCA 148859 Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043 ||| |||| ||| ||| || ||||||| ||||| || || || || || ||||| Sbjct 148860 AAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAG 148919 Query 133044 GCGCTCGCCGAACGTGG-CTTCT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 |||| | |||| | || |||| | ||| |||||| ||| ||||| || ||||| Sbjct 148920 ACGCTGGGCGAAGGAGGAGTTCTCATCGCT---GATCCACTTCAGGGCCCAGTCAGCCTT 148976 >seq356 Length=254992 Score = 127 bits (140), Expect = 2e-24 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| |||||||| |||| |||||| || |||| | | | | |||| | || Sbjct 84674 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATCGATAACG-TGAAG 84616 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| || ||| |||| || ||||| ||||||| ||| ||| Sbjct 84615 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 84556 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| ||||||||| |||||||||||| || ||||| | || || Sbjct 84555 AAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTC 84496 Query 38445 CATTTGGTGCTGCG 38458 || ||||| || || Sbjct 84495 CACTTGGTTCTCCG 84482 >seq477 Length=261965 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || |||||| | Sbjct 234391 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 234332 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| || Sbjct 234331 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 234272 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| ||| Sbjct 234271 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 234212 Query 38433 G 38433 | Sbjct 234211 G 234211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166991743360