Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq69 232 8e-56 seq134 114 2e-20 >seq69 Length=209040 Score = 232 bits (256), Expect = 8e-56 Identities = 481/718 (67%), Gaps = 8/718 (1%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 13387 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 13446 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || || || || | | | || | ||||| || || || Sbjct 13447 GGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGACACGGGGGATACGGGTGGAA 13506 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||||| ||||| || | || | || || |||| ||| | ||| || Sbjct 13507 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTGAGGACG 13566 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | ||| ||||||| |||| || || ||||| || || ||| Sbjct 13567 CGGTCGACGGGCTGGATAGTAGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCA 13626 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| || | || ||| | | || ||||| || |||| || Sbjct 13627 CGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAACAGGGAGTCAATCTCGATGGAGGTC 13686 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGA------ 7375 || || | ||| || | || ||||| || ||||| || || || || | | Sbjct 13687 TGGGCAGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCAGTGCGGAGANNNNNNNNN 13746 Query 7376 --CGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAG 7433 || ||||| || | |||| ||| | ||| ||||| || || || || ||||| | Sbjct 13747 NGCGCAGGGCGCGGGCGTTAGAGGACAGATCCTTCTTGTGCTTGCGCTTGAACTCGTTGA 13806 Query 7434 AGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGG 7493 |||||| | ||| | ||||| || |||||||||||||| || || || |||| Sbjct 13807 CGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGG 13866 Query 7494 TCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCAC 7553 | | ||||| || || || || | |||||| | | | || ||||| || ||||||| Sbjct 13867 TGGACTTGACCTCGAAAATGCCCTCCTCAATGGTCAGGAGAGACACATCGAAAGTACCAC 13926 Query 7554 CACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACG 7613 |||| || || || ||||| ||||| ||| | || ||||| || |||||||| | Sbjct 13927 CACCAAGATCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCAAGACCGTAGG 13986 Query 7614 CGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG 7673 | ||||| || || || || || || || |||||||| ||| ||||| ||||| Sbjct 13987 CAATAGCGGCAGCGGTAGGCTCGTTGATGATACGAAGGACGTTGAGGCCGGCAATGAGAC 14046 Query 7674 CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || || || || || || || || || ||||| |||||||| || || || || || Sbjct 14047 CGGCGTCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGAACAGTGACAAC 14104 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 |||||||| | ||||||| |||| ||||| | ||| || |||||||| ||||| Sbjct 14322 TTCATATCAGCCTGGACCTCGGAGTCCTGGAACTTGCGTCCAATGAGACGCTTGGCATCG 14381 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | |||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 14382 AAGACCGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTGGCCGCATCTCCGATCAGACGC 14441 Query 8018 TCA 8020 ||| Sbjct 14442 TCA 14444 >seq134 Length=182282 Score = 114 bits (126), Expect = 2e-20 Identities = 344/529 (65%), Gaps = 21/529 (4%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAA 7299 ||| ||||| ||||| |||||||| || || || ||| || |||| ||| | | Sbjct 127149 CAGGTCCTCGAAACGAGCACGGGTGATCTGGGTGGTGTAG---TCCTCGCCATCGAAGAG 127205 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357 || || || || ||||| || || || || | || | || ||||| || ||||| Sbjct 127206 AGAGTCGATCTCGATGGTGGTCTGGGCACCGCTG--GAAAGGGTACGCTTGGCACGCTCG 127263 Query 7358 CACGCCGTTCGTAAACG--------ACGAAGGGCACGCGGGTTACCGGAAATATCTTTCT 7409 || || || || | | ||| |||||||| |||| || || | || |||| Sbjct 127264 CAAGCAGTGCGGAGANNNNNNNNNNACGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCT 127323 Query 7410 TATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCAC 7469 | || || | || || | | |||| ||| || | | ||||| || | || Sbjct 127324 TGGTCTTGCGCTGGAAGTCCTTCTTGCAGTGGTCAAGAAGGTTGGTGTCGAAGTCCTGAC 127383 Query 7470 CACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTA 7529 |||||||||| || || || ||||| || ||||| |||| ||| || | ||||| | Sbjct 127384 CACCCAAGTGGGTGTCACCAGCGGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTAA 127443 Query 7530 ACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGT 7589 | || ||||| || ||||||||||||| ||| | ||||| ||||| || | | Sbjct 127444 GGAGGGAGACATCGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGC 127503 Query 7590 C---TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 | ||| | | |||||||| || || || || || || || || || || |||| Sbjct 127504 CAGACTTGCCGGCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATAC 127563 Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706 | || ||| || || || || | | || || || || || || || || |||| Sbjct 127564 GGAGGACGTTAAGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGT 127623 Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 | |||||||| ||||| || | ||| || | | ||| ||||| || || Sbjct 127624 TGAAGTAGGCAGGGACGGTGATGACGGCCTTCTCGACCTTCTTGCCAAG 127672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635125424520360