Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq69 232 8e-56
seq134 114 2e-20
>seq69
Length=209040
Score = 232 bits (256), Expect = 8e-56
Identities = 481/718 (67%), Gaps = 8/718 (1%)
Strand=Plus/Plus
Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081
|||||||| ||||| | || ||||| || || |||||||||||||| || | || ||
Sbjct 13387 ATGGCGGCCTGGACGGCAGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 13446
Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141
| || || ||||| || || || || | | | || | ||||| || || ||
Sbjct 13447 GGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGACACGGGGGATACGGGTGGAA 13506
Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201
|| ||||||| ||||| || | || | || || |||| ||| | ||| ||
Sbjct 13507 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTGAGGACG 13566
Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261
||||| || | ||| ||||||| |||| || || ||||| || || |||
Sbjct 13567 CGGTCGACGGGCTGGATAGTAGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCA 13626
Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321
||||| ||||| || ||||| || | || ||| | | || ||||| || |||| ||
Sbjct 13627 CGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAACAGGGAGTCAATCTCGATGGAGGTC 13686
Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGA------ 7375
|| || | ||| || | || ||||| || ||||| || || || || | |
Sbjct 13687 TGGGCAGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCAGTGCGGAGANNNNNNNNN 13746
Query 7376 --CGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAG 7433
|| ||||| || | |||| ||| | ||| ||||| || || || || ||||| |
Sbjct 13747 NGCGCAGGGCGCGGGCGTTAGAGGACAGATCCTTCTTGTGCTTGCGCTTGAACTCGTTGA 13806
Query 7434 AGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGG 7493
|||||| | ||| | ||||| || |||||||||||||| || || || ||||
Sbjct 13807 CGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGG 13866
Query 7494 TCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCAC 7553
| | ||||| || || || || | |||||| | | | || ||||| || |||||||
Sbjct 13867 TGGACTTGACCTCGAAAATGCCCTCCTCAATGGTCAGGAGAGACACATCGAAAGTACCAC 13926
Query 7554 CACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACG 7613
|||| || || || ||||| ||||| ||| | || ||||| || |||||||| |
Sbjct 13927 CACCAAGATCGAAGATGAGAACGTTGCGCTCGCCCTCGGCCTTCTTGTCAAGACCGTAGG 13986
Query 7614 CGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG 7673
| ||||| || || || || || || || |||||||| ||| ||||| |||||
Sbjct 13987 CAATAGCGGCAGCGGTAGGCTCGTTGATGATACGAAGGACGTTGAGGCCGGCAATGAGAC 14046
Query 7674 CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
| || || || || || || || || || ||||| |||||||| || || || || ||
Sbjct 14047 CGGCGTCCTTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGAACAGTGACAAC 14104
Score = 91.5 bits (100), Expect = 2e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957
|||||||| | ||||||| |||| ||||| | ||| || |||||||| |||||
Sbjct 14322 TTCATATCAGCCTGGACCTCGGAGTCCTGGAACTTGCGTCCAATGAGACGCTTGGCATCG 14381
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|| || ||||| | |||||||||||| |||||||| ||||| || ||||| |||||
Sbjct 14382 AAGACCGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTGGCCGCATCTCCGATCAGACGC 14441
Query 8018 TCA 8020
|||
Sbjct 14442 TCA 14444
>seq134
Length=182282
Score = 114 bits (126), Expect = 2e-20
Identities = 344/529 (65%), Gaps = 21/529 (4%)
Strand=Plus/Plus
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAA 7299
||| ||||| ||||| |||||||| || || || ||| || |||| ||| | |
Sbjct 127149 CAGGTCCTCGAAACGAGCACGGGTGATCTGGGTGGTGTAG---TCCTCGCCATCGAAGAG 127205
Query 7300 CGAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357
|| || || || ||||| || || || || | || | || ||||| || |||||
Sbjct 127206 AGAGTCGATCTCGATGGTGGTCTGGGCACCGCTG--GAAAGGGTACGCTTGGCACGCTCG 127263
Query 7358 CACGCCGTTCGTAAACG--------ACGAAGGGCACGCGGGTTACCGGAAATATCTTTCT 7409
|| || || || | | ||| |||||||| |||| || || | || ||||
Sbjct 127264 CAAGCAGTGCGGAGANNNNNNNNNNACGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCT 127323
Query 7410 TATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCAC 7469
| || || | || || | | |||| ||| || | | ||||| || | ||
Sbjct 127324 TGGTCTTGCGCTGGAAGTCCTTCTTGCAGTGGTCAAGAAGGTTGGTGTCGAAGTCCTGAC 127383
Query 7470 CACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTA 7529
|||||||||| || || || ||||| || ||||| |||| ||| || | ||||| |
Sbjct 127384 CACCCAAGTGGGTGTCACCAGCGGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTAA 127443
Query 7530 ACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGT 7589
| || ||||| || ||||||||||||| ||| | ||||| ||||| || | |
Sbjct 127444 GGAGGGAGACATCGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGC 127503
Query 7590 C---TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646
| ||| | | |||||||| || || || || || || || || || || ||||
Sbjct 127504 CAGACTTGCCGGCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATAC 127563
Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706
| || ||| || || || || | | || || || || || || || || ||||
Sbjct 127564 GGAGGACGTTAAGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGT 127623
Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
| |||||||| ||||| || | ||| || | | ||| ||||| || ||
Sbjct 127624 TGAAGTAGGCAGGGACGGTGATGACGGCCTTCTCGACCTTCTTGCCAAG 127672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635125424520360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |