Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq572 190 3e-43 seq686 132 6e-26 >seq572 Length=609512 Score = 190 bits (210), Expect = 3e-43 Identities = 892/1399 (64%), Gaps = 43/1399 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTCT 111668 || ||| ||||| ||||||| || || |||| ||| ||||| |||| | || Sbjct 18190 CCCCAGCACATGATCATGCGTGTTGCAGTCGGCATC--TGGGGT-GATAACGTCGAGCGC 18134 Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728 || | ||||| ||| || |||||| | | |||| |||||| | || || ||| Sbjct 18133 GTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTC 18074 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||||||||||| || ||| |||| || ||||| | | | ||||| Sbjct 18073 TTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 18014 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || || || | || || |||| ||| |||| || ||| ||||| ||| |||| Sbjct 18013 GACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 17954 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 ||||| || || | || || | || | |||| || |||| ||| || Sbjct 17953 GGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCCACTGGCTCCTATATTGCAGGCACC 17894 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | ||| | ||||| |||||||| || |||||| ||| || ||||| Sbjct 17893 AACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTAC 17834 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || | || | ||| ||||| || || |||| |||| |||||||| ||| Sbjct 17833 GTCGATCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATCTACCTTGAGCCCTGG 17777 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||||| || || | |||||| | || ||||| ||||| || | ||||||| || Sbjct 17776 CACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGT 17717 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| || || ||| |||||||||||| || ||||| |||||||||||||| ||| || Sbjct 17716 GCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAG 17657 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | | | | ||| | ||| | || || | || || || || | || | || Sbjct 17656 AACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTACGGC 17597 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAG---AAAGTCGGGCGACTGCG 112256 |||||||| || ||| | ||| ||||||||| || | | |||| ||| Sbjct 17596 GAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATC 17537 Query 112257 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 | || |||| || | ||| | || || ||| || |||| ||||||||||| | Sbjct 17536 AAGG-CCCAGAAGC-----TTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAAC 17483 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||||||||| || || |||| ||||| || || ||||| | || Sbjct 17482 CCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACT 17423 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGC 112435 ||| || ||||||||||| || || ||| | || | | | || || ||| || Sbjct 17422 ATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCAC-CCGACGAGGTCGC 17364 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACAT 112494 ||| || ||| | || || | ||||| |||| | || || | || || | | | Sbjct 17363 TGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGTTGACTACAACGATGGTGTC-T 17305 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 || | | || || ||||| || || | || ||| | |||| | | Sbjct 17304 ACGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACTTGAACAAGATCA 17245 Query 112555 TTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 ||||| || ||||||||| ||| ||||| || || ||| | ||||| | Sbjct 17244 TTGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAACAGCAACATGCGTCACCGCC 17188 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT- 112670 | ||||||||||||||||| ||||| || |||| ||| | ||| || || ||| Sbjct 17187 CCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTTTC 17129 Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730 || || ||| || || |||| | || || ||||| || || ||||| ||| Sbjct 17128 GAGTCTCCCGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCT 17069 Query 112731 CT--TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788 || | | |||| || |||| ||| || || | || || | ||||| | Sbjct 17068 CTGACCATGTCTGTTC--AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGCT 17011 Query 112789 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 112848 | || || || || | || || | || |||||| | | || || | || Sbjct 17010 CCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCT 16951 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 || |||||| |||| ||||| | ||||||||| | ||| | || |||||| | | Sbjct 16950 GGGATTGGGACTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTCG 16891 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | || || ||||| || |||||||| | || |||||||| || || || ||||| || | Sbjct 16890 TTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAGC 16831 Query 112969 CCTACACGACGAACATCTA 112987 | ||||| | |||||||| Sbjct 16830 CATACACCTCCAACATCTA 16812 >seq686 Length=266282 Score = 132 bits (146), Expect = 6e-26 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCGCGTTCCTTT 102176 |||| ||||| || || ||||| |||||||| | ||| || || ||||| Sbjct 148985 ATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCC---TCCTTC 148929 Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 || |||| || | || ||||| ||||||||||||||||||| ||| | || | Sbjct 148928 GCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCC 148869 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 | || | ||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 148868 TCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTC 148809 Query 102297 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||||||||| || ||| || ||||| Sbjct 148808 ATCTCCCGTGACGAGGGTCTTCACACCGACTTTGC 148774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735191628880