Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq572 190 3e-43
seq686 132 6e-26
>seq572
Length=609512
Score = 190 bits (210), Expect = 3e-43
Identities = 892/1399 (64%), Gaps = 43/1399 (3%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA---TTGATTCT 111668
|| ||| ||||| ||||||| || || |||| ||| ||||| |||| | ||
Sbjct 18190 CCCCAGCACATGATCATGCGTGTTGCAGTCGGCATC--TGGGGT-GATAACGTCGAGCGC 18134
Query 111669 GTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTC 111728
|| | ||||| ||| || |||||| | | |||| |||||| | || || |||
Sbjct 18133 GTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTC 18074
Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788
|||||||||||||| || ||| |||| || ||||| | | | |||||
Sbjct 18073 TTCAACGCTGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 18014
Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848
|| || || | || || |||| ||| |||| || ||| ||||| ||| ||||
Sbjct 18013 GACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 17954
Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908
||||| || || | || || | || | |||| || |||| ||| ||
Sbjct 17953 GGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCCACTGGCTCCTATATTGCAGGCACC 17894
Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968
|| || || | ||| | ||||| |||||||| || |||||| ||| || |||||
Sbjct 17893 AACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTAC 17834
Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022
|| | || | ||| ||||| || || |||| |||| |||||||| |||
Sbjct 17833 GTCGATCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATCTACCTTGAGCCCTGG 17777
Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082
||||| || || | |||||| | || ||||| ||||| || | ||||||| ||
Sbjct 17776 CACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGT 17717
Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142
||| || || ||| |||||||||||| || ||||| |||||||||||||| ||| ||
Sbjct 17716 GCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAG 17657
Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202
| | | | ||| | ||| | || || | || || || || | || | ||
Sbjct 17656 AACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCTGACTGCTACGGC 17597
Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAG---AAAGTCGGGCGACTGCG 112256
|||||||| || ||| | ||| ||||||||| || | | |||| |||
Sbjct 17596 GAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGTCGCAAGACCATC 17537
Query 112257 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316
| || |||| || | ||| | || || ||| || |||| ||||||||||| |
Sbjct 17536 AAGG-CCCAGAAGC-----TTTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAAC 17483
Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376
|| | ||||||||||| || || |||| ||||| || || ||||| | ||
Sbjct 17482 CCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGAACT 17423
Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGC 112435
||| || ||||||||||| || || ||| | || | | | || || ||| ||
Sbjct 17422 ATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCAC-CCGACGAGGTCGC 17364
Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACAT 112494
||| || ||| | || || | ||||| |||| | || || | || || | | |
Sbjct 17363 TGTCTGCAACTTGGCTTCCCTTGCTCTGCCCACCTTCGTTGACTACAACGATGGTGTC-T 17305
Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554
|| | | || || ||||| || || | || ||| | |||| | |
Sbjct 17304 ACGACTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTTCGCAACTTGAACAAGATCA 17245
Query 112555 TTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611
||||| || ||||||||| ||| ||||| || || ||| | ||||| |
Sbjct 17244 TTGATGTCAACCACTACCCCGTTCCCGAG---GCTCGCAACAGCAACATGCGTCACCGCC 17188
Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT- 112670
| ||||||||||||||||| ||||| || |||| ||| | ||| || || |||
Sbjct 17187 CCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCTCGCCCTTCG-CATGCCTTTC 17129
Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730
|| || ||| || || |||| | || || ||||| || || ||||| |||
Sbjct 17128 GAGTCTCCCGAGGCCCGTGATCTCAACAAGAAGATCTTCGAGACCATCTACCACGCTGCT 17069
Query 112731 CT--TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788
|| | | |||| || |||| ||| || || | || || | ||||| |
Sbjct 17068 CTGACCATGTCTGTTC--AGCTGGCCAAGGAGGAGGGCACCTACTCCACGTACGAGGGCT 17011
Query 112789 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 112848
| || || || || | || || | || |||||| | | || || | ||
Sbjct 17010 CCCCTATCTCCCAGGGTATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCT 16951
Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908
|| |||||| |||| ||||| | ||||||||| | ||| | || |||||| | |
Sbjct 16950 GGGATTGGGACTCTCTGAAGGAGCAGATCAAGGAGCACGGTGTGCGCAACAGTTTGCTCG 16891
Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968
| || || ||||| || |||||||| | || |||||||| || || || ||||| || |
Sbjct 16890 TTGCTCCCATGCCTACTGCCTCCACTTCGCAGATCTTGGGCAACAACGAGTGCTTCGAGC 16831
Query 112969 CCTACACGACGAACATCTA 112987
| ||||| | ||||||||
Sbjct 16830 CATACACCTCCAACATCTA 16812
>seq686
Length=266282
Score = 132 bits (146), Expect = 6e-26
Identities = 159/215 (74%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCGCGTTCCTTT 102176
|||| ||||| || || ||||| |||||||| | ||| || || |||||
Sbjct 148985 ATTCGCAAGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGATGAGAACTCC---TCCTTC 148929
Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236
|| |||| || | || ||||| ||||||||||||||||||| ||| | || |
Sbjct 148928 GCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCC 148869
Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296
| || | ||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 148868 TCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTC 148809
Query 102297 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||| ||||||||||| || ||| || |||||
Sbjct 148808 ATCTCCCGTGACGAGGGTCTTCACACCGACTTTGC 148774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620735191628880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |