Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq572 187 3e-42
seq95 118 1e-21
seq686 86.0 7e-12
>seq572
Length=609512
Score = 187 bits (206), Expect = 3e-42
Identities = 1160/1835 (63%), Gaps = 67/1835 (4%)
Strand=Plus/Plus
Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458
|||| || || || || ||||| ||||| ||||||||| |||||| || | |||
Sbjct 16458 GCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGC 16517
Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518
|| | || ||| | |||||| || ||| | ||| | ||||| |||||
Sbjct 16518 ATACTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGG 16577
Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCC 109575
|||||||| |||||| || || ||||| | | | | | | || || || | |||
Sbjct 16578 TCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTG--GGATA-TCTCC 16634
Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635
||||| |||||||||| | ||||| ||| ||||||||| |||||| || |||||
Sbjct 16635 CAGACGGTCTTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA- 16693
Query 109636 CCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTG 109692
||| || | |||| | | |||||| | | ||||| || || | | |
Sbjct 16694 --ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACG 16751
Query 109693 AGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751
||||| | |||||| | ||| || || || || || ||||| || || |
Sbjct 16752 AGATCCTTCAACAACCAGGG-GTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTG 16810
Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811
||||||||| | ||||| || ||||| ||||| |||||||| | ||| || | ||||||
Sbjct 16811 GTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGA 16870
Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871
|| || ||||||||||| | ||| | |||||| || | ||| | | ||| | | ||||
Sbjct 16871 GGCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTC 16930
Query 109872 ACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGG 109931
|| | ||||||||| | | || | || ||| |||||| ||
Sbjct 16931 CTTCAGAGAGTCCCAATCCCAGAGGTCA------GAGGGCTTGACATTCCACATGTCGTA 16984
Query 109932 TTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTC 109991
|| || | ||||| | ||| || |||| | | | ||| | ||||| |||
Sbjct 16985 CTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTT 17044
Query 109992 GGCCAACTCGGATGA-AGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCAT 110050
||||| || || | || || || || || || || ||||| || || | |
Sbjct 17045 GGCCAGCTGAACAGACATGGTC-AGAGCAGCGTGGTAGATGGTCTCGAAGATCT---TCT 17100
Query 110051 TCATGAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107
| |||| || | ||| | | ||||| || | | | | || |||| |
Sbjct 17101 TGTTGAGATCACGGGCCTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAG 17160
Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167
| |||||||| |||||||||||||||||||| || |||||| | |||||
Sbjct 17161 CAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGG 17220
Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227
|||||||| |||| || |||| | || | || || || ||||
Sbjct 17221 GAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGA 17280
Query 110228 TTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTC-TCCTTATTGACATATTTGGGGAGA 110286
|| || || || | | | ||| | | | || | | | || | |||| |||
Sbjct 17281 CCTCGTGAAGCTTCTGGAAGTCGTA-GACACCATCGTTGTAGTCAACGAAGGTGGGCAGA 17339
Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346
|||| || || | ||||| |||| |||||| || ||| || | || ||
Sbjct 17340 GCAAGGGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCA 17399
Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406
|| || | |||||| || || || | ||||||||| || ||| ||||
Sbjct 17400 GTGCAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 17459
Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466
|||||||| || |||||| | ||| | ||||| || ||||| | || ||| ||||| | |
Sbjct 17460 GCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATAC 17519
Query 110467 CATACATCGGCGGCGGGGAC-AGTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTG 110520
|| | || | ||| | | || | |||| |||| |||| |||||||||
Sbjct 17520 CAAA-----GCTTCTGGGCCTTGATGGTCTTGCGA-CCCTTGCCCTCGCGCTCGTACTTC 17573
Query 110521 GTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGA 110580
||||||| |||| || |||| ||||| |||| || || || | |||
Sbjct 17574 TCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGG 17633
Query 110581 CAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCAC 110640
|| | ||||| ||| | | || ||| || |||||||||||||| || || |||||
Sbjct 17634 CACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAG 17693
Query 110641 ATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCC 110700
| || ||||||||||||| ||| |||| || | || ||||| ||| | |||
Sbjct 17694 AGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCC 17753
Query 110701 AAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA 110760
| || || | || || | |||||| || || || |||| ||||| | || | ||
Sbjct 17754 ATGAACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCC---AGGA 17810
Query 110761 CG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814
|| || |||| | || ||||| || ||| || ||||| | ||||| |||
Sbjct 17811 CGCTTGTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGA 17870
Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCG 110874
|| | || | || || || || || ||| ||| | ||||||| || |
Sbjct 17871 ATGACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGG 17930
Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGT 110933
|| | | |||||| ||||| ||| ||| || || || ||| |||| ||
Sbjct 17931 TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCT-TGAGGGT 17989
Query 110934 ACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993
| || ||||| ||||| || ||| |||| || | | || ||||| ||||||| |||
Sbjct 17990 GTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG 18049
Query 110994 AGGAC-GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG-- 111050
| || |||| || || || ||||||||||| || | || || ||| ||| ||||
Sbjct 18050 -GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCT 18106
Query 111051 GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGC 111110
|||||| |||||| || |||| || || | | ||| || || | ||
Sbjct 18107 GGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGC 18166
Query 111111 AACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCT---GAAG 111167
||| ||||||| ||| | || || | ||| | ||| ||||||| ||| | ||
Sbjct 18167 AACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAA---GCTTGAGCAG 18223
Query 111168 GTA-ACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201
||| |||| || |||||||||| || ||||||
Sbjct 18224 GTATGATCTT-TCCAGGGTCTTGAAGCCGAAGTAT 18257
>seq95
Length=35920
Score = 118 bits (130), Expect = 1e-21
Identities = 335/504 (66%), Gaps = 33/504 (7%)
Strand=Plus/Minus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
||||||||||| || || | || || | ||||| || ||| | | ||| || | ||
Sbjct 25787 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 25728
Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
| ||| |||| || | ||| | ||| |||||||||||| || || | | ||||||
Sbjct 25727 AGGACAACAA--CCTG-CTCCTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTC 25671
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-------CACCTGCC--GAACGCTTC 11673
| || ||| ||||| |||||| ||| | | |||| | || ||
Sbjct 25670 AGAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTCCTGTCTTGATCG---- 25615
Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
||| | ||||| |||||||||||||| | ||| || || | || || | |
Sbjct 25614 --ACCAATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTT 25557
Query 11734 TCGAAAAGTTCACGTACACGCTTC--GCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791
| || || || || ||| ||| | || ||||| || |||||||| || || | |
Sbjct 25556 GCAAACAGGTCTCG--CACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGG 25499
Query 11792 --CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849
| || || | ||||| |||||||||| |||||| || ||| |||| || || |
Sbjct 25498 AACCGCTGA-CGCTGAA-GAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAA 25441
Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--A 11907
|||||||| || || || | ||||| |||| ||||||||| |||||||| || || |
Sbjct 25440 TGTCTTACCGGTTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCCTAA 25381
Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967
| || | ||||||| || ||||||||||| |||| |||| || ||| |||
Sbjct 25380 CCTCTCGA--AGCGCTCGGGGGTCTTGAGGAAGCTGACAAACTCCATAATCTCCGTCTTA 25323
Query 11968 GCGGAGTCGATACCCTCAACATCG 11991
|| ||| ||||| |||| |||
Sbjct 25322 GCCTCGTCCATACCGGCAACGTCG 25299
>seq686
Length=266282
Score = 86.0 bits (94), Expect = 7e-12
Identities = 144/205 (70%), Gaps = 5/205 (2%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||||| || || || || ||||||||||| || |||| || ||
Sbjct 148773 GGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACC 148832
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| || | ||||| ||||||||||||| |||| || ||||||||
Sbjct 148833 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGAT 148892
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670
||||| ||| ||| || || | ||||||| || |||| ||| || || ||
Sbjct 148893 ACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGC-GAAGGAGGAGTTCTCATCGCTGA 148951
Query 119671 ACCACTTGAGAGCCCAGTTGGCCTT 119695
|||||| || ||||||| |||||
Sbjct 148952 TCCACTTCAGGGCCCAGTCAGCCTT 148976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588969160516200
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