Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq572 187 3e-42 seq95 118 1e-21 seq686 86.0 7e-12 >seq572 Length=609512 Score = 187 bits (206), Expect = 3e-42 Identities = 1160/1835 (63%), Gaps = 67/1835 (4%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| || || || || ||||| ||||| ||||||||| |||||| || | ||| Sbjct 16458 GCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGC 16517 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | || ||| | |||||| || ||| | ||| | ||||| ||||| Sbjct 16518 ATACTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTAAGGGACTGGGACTGG 16577 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCC 109575 |||||||| |||||| || || ||||| | | | | | | || || || | ||| Sbjct 16578 TCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTGCGCTG--GGATA-TCTCC 16634 Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635 ||||| |||||||||| | ||||| ||| ||||||||| |||||| || ||||| Sbjct 16635 CAGACGGTCTTGTACAGAGCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGA- 16693 Query 109636 CCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTG 109692 ||| || | |||| | | |||||| | | ||||| || || | | | Sbjct 16694 --ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCACAGGCCCATGTCGACG 16751 Query 109693 AGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 ||||| | |||||| | ||| || || || || || ||||| || || | Sbjct 16752 AGATCCTTCAACAACCAGGG-GTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTG 16810 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| || ||||| ||||| |||||||| | ||| || | |||||| Sbjct 16811 GTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGA 16870 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871 || || ||||||||||| | ||| | |||||| || | ||| | | ||| | | |||| Sbjct 16871 GGCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTGCTC 16930 Query 109872 ACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGG 109931 || | ||||||||| | | || | || ||| |||||| || Sbjct 16931 CTTCAGAGAGTCCCAATCCCAGAGGTCA------GAGGGCTTGACATTCCACATGTCGTA 16984 Query 109932 TTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTC 109991 || || | ||||| | ||| || |||| | | | ||| | ||||| ||| Sbjct 16985 CTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTT 17044 Query 109992 GGCCAACTCGGATGA-AGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCAT 110050 ||||| || || | || || || || || || || ||||| || || | | Sbjct 17045 GGCCAGCTGAACAGACATGGTC-AGAGCAGCGTGGTAGATGGTCTCGAAGATCT---TCT 17100 Query 110051 TCATGAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107 | |||| || | ||| | | ||||| || | | | | || |||| | Sbjct 17101 TGTTGAGATCACGGGCCTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAG 17160 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167 | |||||||| |||||||||||||||||||| || |||||| | ||||| Sbjct 17161 CAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCGG 17220 Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227 |||||||| |||| || |||| | || | || || || |||| Sbjct 17221 GAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGA 17280 Query 110228 TTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTC-TCCTTATTGACATATTTGGGGAGA 110286 || || || || | | | ||| | | | || | | | || | |||| ||| Sbjct 17281 CCTCGTGAAGCTTCTGGAAGTCGTA-GACACCATCGTTGTAGTCAACGAAGGTGGGCAGA 17339 Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 |||| || || | ||||| |||| |||||| || ||| || | || || Sbjct 17340 GCAAGGGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCA 17399 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || || | |||||| || || || | ||||||||| || ||| |||| Sbjct 17400 GTGCAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 17459 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 |||||||| || |||||| | ||| | ||||| || ||||| | || ||| ||||| | | Sbjct 17460 GCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATAC 17519 Query 110467 CATACATCGGCGGCGGGGAC-AGTTGCGTTAGCGAGACCTT--CCTC---CTCGTACTTG 110520 || | || | ||| | | || | |||| |||| |||| ||||||||| Sbjct 17520 CAAA-----GCTTCTGGGCCTTGATGGTCTTGCGA-CCCTTGCCCTCGCGCTCGTACTTC 17573 Query 110521 GTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGA 110580 ||||||| |||| || |||| ||||| |||| || || || | ||| Sbjct 17574 TCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGG 17633 Query 110581 CAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCAC 110640 || | ||||| ||| | | || ||| || |||||||||||||| || || ||||| Sbjct 17634 CACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAG 17693 Query 110641 ATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCC 110700 | || ||||||||||||| ||| |||| || | || ||||| ||| | ||| Sbjct 17694 AGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCC 17753 Query 110701 AAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA 110760 | || || | || || | |||||| || || || |||| ||||| | || | || Sbjct 17754 ATGAACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCC---AGGA 17810 Query 110761 CG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 || || |||| | || ||||| || ||| || ||||| | ||||| ||| Sbjct 17811 CGCTTGTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGA 17870 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCG 110874 || | || | || || || || || ||| ||| | ||||||| || | Sbjct 17871 ATGACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGG 17930 Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGT 110933 || | | |||||| ||||| ||| ||| || || || ||| |||| || Sbjct 17931 TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCT-TGAGGGT 17989 Query 110934 ACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993 | || ||||| ||||| || ||| |||| || | | || ||||| ||||||| ||| Sbjct 17990 GTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG 18049 Query 110994 AGGAC-GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG-- 111050 | || |||| || || || ||||||||||| || | || || ||| ||| |||| Sbjct 18050 -GCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCT 18106 Query 111051 GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGC 111110 |||||| |||||| || |||| || || | | ||| || || | || Sbjct 18107 GGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGC 18166 Query 111111 AACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCT---GAAG 111167 ||| ||||||| ||| | || || | ||| | ||| ||||||| ||| | || Sbjct 18167 AACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAA---GCTTGAGCAG 18223 Query 111168 GTA-ACTCTTCTCTAGGGTCTTGAGACCAAAGTAT 111201 ||| |||| || |||||||||| || |||||| Sbjct 18224 GTATGATCTT-TCCAGGGTCTTGAAGCCGAAGTAT 18257 >seq95 Length=35920 Score = 118 bits (130), Expect = 1e-21 Identities = 335/504 (66%), Gaps = 33/504 (7%) Strand=Plus/Minus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 ||||||||||| || || | || || | ||||| || ||| | | ||| || | || Sbjct 25787 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGGATGTCGGCTCTGTTGGTGCCAGCG 25728 Query 11566 ATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| |||| || | ||| | ||| |||||||||||| || || | | |||||| Sbjct 25727 AGGACAACAA--CCTG-CTCCTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTC 25671 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATAC-------CACCTGCC--GAACGCTTC 11673 | || ||| ||||| |||||| ||| | | |||| | || || Sbjct 25670 AGAGTTGCTTCGCGCTCGTCGTTGCCACCCATTCGGTTACCCTCCTGTCTTGATCG---- 25615 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||| | ||||| |||||||||||||| | ||| || || | || || | | Sbjct 25614 --ACCAATGGCGTCGATCTCATCGATGAAGATGATGCAGGGGGCACTCTTGCGGGCATTT 25557 Query 11734 TCGAAAAGTTCACGTACACGCTTC--GCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 | || || || || ||| ||| | || ||||| || |||||||| || || | | Sbjct 25556 GCAAACAGGTCTCG--CACTCTTGAAGGACCGACACCGACAAACATCTCGACAAACTCGG 25499 Query 11792 --CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | || || | ||||| |||||||||| |||||| || ||| |||| || || | Sbjct 25498 AACCGCTGA-CGCTGAA-GAAGGGAACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAA 25441 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--A 11907 |||||||| || || || | ||||| |||| ||||||||| |||||||| || || | Sbjct 25440 TGTCTTACCGGTTCCTGGGGGTCCAGCAAGAATGGCGCCACGAGGGATCTTTGCGCCTAA 25381 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | || | ||||||| || ||||||||||| |||| |||| || ||| ||| Sbjct 25380 CCTCTCGA--AGCGCTCGGGGGTCTTGAGGAAGCTGACAAACTCCATAATCTCCGTCTTA 25323 Query 11968 GCGGAGTCGATACCCTCAACATCG 11991 || ||| ||||| |||| ||| Sbjct 25322 GCCTCGTCCATACCGGCAACGTCG 25299 >seq686 Length=266282 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/205 (70%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || || || || ||||||||||| || |||| || || Sbjct 148773 GGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACC 148832 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || | ||||| ||||||||||||| |||| || |||||||| Sbjct 148833 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGAT 148892 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| ||| ||| || || | ||||||| || |||| ||| || || || Sbjct 148893 ACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGC-GAAGGAGGAGTTCTCATCGCTGA 148951 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTT 119695 |||||| || ||||||| ||||| Sbjct 148952 TCCACTTCAGGGCCCAGTCAGCCTT 148976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969160516200