Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq356 143 6e-29
seq863 105 1e-17
>seq356
Length=254992
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || ||||| ||||| || ||||| |||||||| | || || | ||||| ||
Sbjct 83974 ACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATCCTCA 84033
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| |||||||| || || || |||||
Sbjct 84034 AGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCTTGG 84093
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| ||||||||||| ||| ||| || || || |||| ||||||
Sbjct 84094 ATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTG 84153
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 84154 CCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || || || || || || |||||||| ||| | ||| | ||||||||
Sbjct 83746 ACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCC 83805
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || ||||||||||| || || ||||| ||||| || || || ||||| ||
Sbjct 83806 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 83865
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| ||||| ||||| || || ||||| | |||| |||||||
Sbjct 83866 ATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTT 83925
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || ||||| | |||||
Sbjct 83926 CCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
Score = 104 bits (114), Expect = 5e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||| ||||||||||| || ||||| ||||| |||| || || | ||||| ||
Sbjct 84201 AACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 84260
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| ||||| || || ||||| | || || ||||| || || ||||| || || || ||
Sbjct 84261 AAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 84320
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || |||||| || || || || || ||| || || || ||||| | |||||
Sbjct 84321 AATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTT 84380
Query 195111 TCCTGTCAAAGTTTTTACGA 195130
|| || | || || ||||
Sbjct 84381 GCCAGTGAGCGTCTTGACGA 84400
Score = 93.3 bits (102), Expect = 9e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||| || || ||||| || ||||| ||||| |||| || || | || || ||
Sbjct 84487 AACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 84546
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || ||||| || || || || || || || || ||||| || ||||| ||
Sbjct 84547 GAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTG 84606
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || ||| ||||| || ||||| || || || || || || || | |||||
Sbjct 84607 GATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTCTT 84666
Query 195111 TCCTGT 195116
|| ||
Sbjct 84667 GCCGGT 84672
>seq863
Length=517823
Score = 105 bits (116), Expect = 1e-17
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| || ||||||||||| || |||||||| || || || ||||| || || ||||| ||
Sbjct 7416 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCC 7357
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| || || || |||||| || || |||||||| || ||||| ||||||||
Sbjct 7356 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 7297
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153
| ||||| || |||| || || ||||| | ||||| || ||||||
Sbjct 7296 ATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGATTGCCTACTTG 7246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109468394048543
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |