Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq356 87.8 1e-12
>seq356
Length=254992
Score = 87.8 bits (96), Expect = 1e-12
Identities = 142/202 (70%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | ||| || ||||||||||| ||||| || ||| | || |||| ||
Sbjct 84201 AACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 84260
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| || || || ||||| || | || |||||||| | || | |||||||| ||
Sbjct 84261 AAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 84320
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||||||| ||||| || | ||||| ||| | ||| || |||| ||| ||||
Sbjct 84321 AATCTTCGACTTGAC--AT--TGTCGATAGTATCAGAAGACTCGACCTCGAGGGTGATGG 84376
Query 34948 TTTTTCCCGTGAGAGTCTTCAC 34969
| || || ||||| ||||| ||
Sbjct 84377 TCTTGCCAGTGAGCGTCTTGAC 84398
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| || ||||| ||| | || |||| || ||||| |||||||| ||
Sbjct 83992 TCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAG 84051
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || |||||||| | || | |||||||| || |||||| ||||||
Sbjct 84052 ATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTG 84111
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||||| |||| || || || || || || || ||||| ||
Sbjct 84112 TCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACG 84171
Query 34971 AAGATCTGCATA 34982
|| |||||||||
Sbjct 84172 AAAATCTGCATA 84183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324629924437512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |