Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq356 87.8 1e-12 >seq356 Length=254992 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||||||||| ||||| || ||| | || |||| || Sbjct 84201 AACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 84260 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || | || |||||||| | || | |||||||| || Sbjct 84261 AAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 84320 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||||| ||||| || | ||||| ||| | ||| || |||| ||| |||| Sbjct 84321 AATCTTCGACTTGAC--AT--TGTCGATAGTATCAGAAGACTCGACCTCGAGGGTGATGG 84376 Query 34948 TTTTTCCCGTGAGAGTCTTCAC 34969 | || || ||||| ||||| || Sbjct 84377 TCTTGCCAGTGAGCGTCTTGAC 84398 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || ||||| ||| | || |||| || ||||| |||||||| || Sbjct 83992 TCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAG 84051 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| | || | |||||||| || |||||| |||||| Sbjct 84052 ATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTG 84111 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| |||| || || || || || || || ||||| || Sbjct 84112 TCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACG 84171 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 84172 AAAATCTGCATA 84183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629924437512