Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq230 116 3e-21
>seq230
Length=716270
Score = 116 bits (128), Expect = 3e-21
Identities = 446/696 (64%), Gaps = 67/696 (10%)
Strand=Plus/Minus
Query 29744 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 29803
|||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| |
Sbjct 622120 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 622061
Query 29804 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCC 29862
||| |||||||| ||| ||||||||| ||||| |||| | ||| | | || ||||
Sbjct 622060 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 622002
Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922
||| | || || | | || ||||||| ||| ||||| | ||||||||| |||||
Sbjct 622001 GGTACCAGGTCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGTAGCTGGCAATGTTG 621942
Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 29977
||||| || ||||| |||||||| | |||| |||||| | ||| || ||| |
Sbjct 621941 AAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAACTGGCAATGGAGGTGGCCC 621882
Query 29978 -----------CTC--------------CGTCGC----TC-----------ACGTAAAAC 29997
||| || ||| || |||||||||
Sbjct 621881 TTTGGCTTCTCCTCGTTTGCGGGCGTTGCGCCGCGGGCTCGCGGGTACGAGACGTAAAAC 621822
Query 29998 TG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30054
|| | ||||| |||||||| || || ||||| || ||| |||||||||
Sbjct 621821 TGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGGTTCCAG 621765
Query 30055 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30114
|||| | || |||||| | ||| | ||||| || ||| || | | | | |
Sbjct 621764 GCGCTAAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCC 621705
Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174
|| || || || ||| |||| ||| || | | | ||| |||||| || || ||
Sbjct 621704 AGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAAG 621645
Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234
|| | ||| ||||| |||||||| || || ||||| || |||| | ||| ||| ||
Sbjct 621644 TGGCGCCATTGGAAGCCGTACACGGGACCGAGGTCACCGACTTCGCGGTG-GGAAAGACC 621586
Query 30235 CTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTC- 30290
| |||| | || || | || || ||| ||||||||||||| || || |||| |
Sbjct 621585 GACGCTGTCGAGGAACTCGCGCGATCCATTGCCGTCCCAGATCTTGACACCGGCTTCGCT 621526
Query 30291 ---GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30347
|| |||| | || | ||| | ||||| |||||||||||| || || | | |||
Sbjct 621525 CAGGGCGAGCGAT---GA-TGTGTTG-CCCTC-GACGAACCACAGGAGTTCGGCAATGAC 621472
Query 30348 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
|| ||||| | ||| || |||||||||||
Sbjct 621471 TGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGG 621436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408612973554917
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |