Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq230 116 3e-21 >seq230 Length=716270 Score = 116 bits (128), Expect = 3e-21 Identities = 446/696 (64%), Gaps = 67/696 (10%) Strand=Plus/Minus Query 29744 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCA 29803 |||| |||| ||| ||| || ||| ||| ||||||| ||| ||||| ||| | Sbjct 622120 CCCTGTTGTTGATCTCCAGCAGCGGGAAGTCTCTCGGCTCCCGCTCCAGCTGCACCTTGA 622061 Query 29804 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCC 29862 ||| |||||||| ||| ||||||||| ||||| |||| | ||| | | || |||| Sbjct 622060 GCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 622002 Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922 ||| | || || | | || ||||||| ||| ||||| | ||||||||| ||||| Sbjct 622001 GGTACCAGGTCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGTAGCTGGCAATGTTG 621942 Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----- 29977 ||||| || ||||| |||||||| | |||| |||||| | ||| || ||| | Sbjct 621941 AAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAACTGGCAATGGAGGTGGCCC 621882 Query 29978 -----------CTC--------------CGTCGC----TC-----------ACGTAAAAC 29997 ||| || ||| || ||||||||| Sbjct 621881 TTTGGCTTCTCCTCGTTTGCGGGCGTTGCGCCGCGGGCTCGCGGGTACGAGACGTAAAAC 621822 Query 29998 TG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30054 || | ||||| |||||||| || || ||||| || ||| ||||||||| Sbjct 621821 TGCGCAAACATG---TGGCACGGCGGGAGCGCCATCTTCTTCAGGTCCGCTGGGTTCCAG 621765 Query 30055 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGC 30114 |||| | || |||||| | ||| | ||||| || ||| || | | | | | Sbjct 621764 GCGCTAAGGAGGATGCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCC 621705 Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 || || || || ||| |||| ||| || | | | ||| |||||| || || || Sbjct 621704 AGTTGGTCGACGCCCTGGCCCGTGTAATCCGTCTTGGAGTCGACGTACTCGGCGCCAAAG 621645 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30234 || | ||| ||||| |||||||| || || ||||| || |||| | ||| ||| || Sbjct 621644 TGGCGCCATTGGAAGCCGTACACGGGACCGAGGTCACCGACTTCGCGGTG-GGAAAGACC 621586 Query 30235 CTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTC- 30290 | |||| | || || | || || ||| ||||||||||||| || || |||| | Sbjct 621585 GACGCTGTCGAGGAACTCGCGCGATCCATTGCCGTCCCAGATCTTGACACCGGCTTCGCT 621526 Query 30291 ---GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30347 || |||| | || | ||| | ||||| |||||||||||| || || | | ||| Sbjct 621525 CAGGGCGAGCGAT---GA-TGTGTTG-CCCTC-GACGAACCACAGGAGTTCGGCAATGAC 621472 Query 30348 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 || ||||| | ||| || ||||||||||| Sbjct 621471 TGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGG 621436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408612973554917