Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq572 352 5e-92
seq686 183 6e-41
>seq572
Length=609512
Score = 352 bits (390), Expect = 5e-92
Identities = 1144/1754 (65%), Gaps = 78/1754 (4%)
Strand=Plus/Plus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| || ||||| | || ||| ||| |||| || || || ||||||||||| |||||
Sbjct 16431 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 16490
Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669
|| || ||| ||||||| | |||||| |||| |||| | || ||
Sbjct 16491 AGACCAAGCTT---CCAGCCGGCGAAGTGCATACTGGTGA---TCTTGCCC---ATTGTC 16541
Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729
|||| | | |||| | ||| |||||||| |||||| ||||| | |
Sbjct 16542 GGGTCCTTCATGTGG---------ATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCA 16592
Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789
| ||| || ||||| | | | | |||||| | |||||| ||||||||| | |
Sbjct 16593 CGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGATATCTCCCAGACGGTCTTGTACAGA 16652
Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTC 212846
| |||| || | || | | |||||||||||| | ||| || | | ||| |
Sbjct 16653 GCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATA 16712
Query 212847 AGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGA 212906
| | | |||| | ||| ||| |||||| || | || ||| | ||
Sbjct 16713 CGGTTCTT---CATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAG 16769
Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966
||||| || | |||||| || || | || || | | ||||| | ||| || |||||
Sbjct 16770 GGGTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAT 16829
Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026
||||||| || ||||||||| |||| ||||| | |||| ||| || |||||||||||
Sbjct 16830 GGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCA 16889
Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086
|| || | |||||| | ||| |||||||| ||| | | || || | |||||
Sbjct 16890 ACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTG-CTCCT----TCAGAG-AGTCC 16943
Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146
|| | ||||| |||| | ||| || ||||||||||| |||| | ||| || | |
Sbjct 16944 CAA-TCCCAGA--GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGG 17000
Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206
| ||| ||||| ||| | |||||||| ||| | |||||||||||||| |||
Sbjct 17001 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGAC 17060
Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266
||| ||||||| ||||||||| || || |||| | ||||||| | ||||||
Sbjct 17061 ATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCTCG 17120
Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATG 213326
|| ||| ||| ||||| | | |||| ||||||| || |||||||| ||||
Sbjct 17121 GGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGA 17180
Query 213327 CCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCA 213385
|| ||||| | ||| | || ||| ||| |||| ||| | |||||| ||||
Sbjct 17181 CCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCGGGAACGGGGTAGTGGTTGAC 17239
Query 213386 GTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445
|| ||||||||||| | |||||| | || | ||||| | | || | || |
Sbjct 17240 ATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGG-- 17297
Query 213446 ATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAG 213499
|| ||||| | || || | || || ||||| || | | ||||
Sbjct 17298 ----AAGTCGTAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAAGGGAAGCCAA 17353
Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559
|||||| || || ||||| | | | |||||| |||||||| ||||| ||||||
Sbjct 17354 GTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGA 17413
Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619
|| ||||| || || ||||||| ||||| ||| |||||||| ||||||||| ||
Sbjct 17414 GCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAG 17473
Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTG 213677
|||| ||||| || ||||| ||| | | | || || ||| ||| || | | |
Sbjct 17474 CATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGAT--GGCATACCAAAGCTTCTGG 17531
Query 213678 GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTT 213736
||||||| | || | | | | | | || |||||||| ||||| | | |
Sbjct 17532 GCCTTGATG----GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTC 17587
Query 213737 GAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795
||| || | ||| || | | | |||| || || || ||| ||||||||| |||
Sbjct 17588 GAACTCCTCGCCGTAGCAGTCAG-CCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCC 17646
Query 213796 AGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854
|||| ||| | |||| |||||||| ||||||||| || |||| ||| || ||| |||
Sbjct 17647 AGTCGGCGTTCTTCTC-GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAA 17705
Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914
||||| | || | ||| ||| ||| ||| ||||||| || | || || |||
Sbjct 17706 AGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAG 17765
Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCC 213971
| ||| |||||||| ||||| | |||||| || || ||||| || | |||| || |||
Sbjct 17766 ACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCC 17825
Query 213972 TGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027
|| || || | || | || |||| |||| || || | ||| | | |||||
Sbjct 17826 TGATCGACG----TAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTT 17881
Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAG--GTTGCTCATGGAG 214085
|| |||||||| || || ||||| ||||| | ||| | | | || | | |||
Sbjct 17882 CGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAG 17941
Query 214086 AGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATG 214145
| || |||||||| || ||||||||||||||||||| | | | || || |||
Sbjct 17942 A--CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATA 17999
Query 214146 CCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGAC 214205
|| | || ||| || | | || | | |||||| || |||||| | |
Sbjct 18000 CCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGG 18059
Query 214206 GAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTG 214265
| |||| |||||| || |||||| ||| ||| | | |||||| | || | ||| ||
Sbjct 18060 GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTG 18119
Query 214266 TAGGTCTCCAGGAC 214279
|||||||| | |||
Sbjct 18120 TAGGTCTCGATGAC 18133
>seq686
Length=266282
Score = 183 bits (202), Expect = 6e-41
Identities = 349/508 (69%), Gaps = 17/508 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| | || | |||||||||||||| ||||| || | | |||||||||||
Sbjct 148482 CTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 148541
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957
||||||| ||||||||||| | || || ||| |||| ||| | |||| |
Sbjct 148542 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAGGA 148600
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
|| | || || ||| |||| ||||| | ||| | | || ||||||||| | || |
Sbjct 148601 GGCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAG 148660
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
||||| ||||| ||||| ||||||| ||| |||| ||||| || | | || |
Sbjct 148661 CGCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGT 148720
Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT-AGAGCAT-----GC 48131
|| || | || ||| |||||| | |||||||| | |||| | ||
Sbjct 148721 CCTCAATG----AC-CTGC----TTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGGC 148771
Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191
|||||||||| |||| | || ||||| ||| ||||||| ||||||||||| ||||
Sbjct 148772 AGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGAC 148831
Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251
||||||||| || | || |||||||| || || | || |||| || ||||||||
Sbjct 148832 CAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGA 148891
Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311
| ||||| || || || || || || | || |||| || | ||||| || ||
Sbjct 148892 TACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTGA 148951
Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339
|||| || |||||||| ||||||||
Sbjct 148952 TCCACTTCAGGGCCCAGTCAGCCTTCTT 148979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931521982575360
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