Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq572 352 5e-92 seq686 183 6e-41 >seq572 Length=609512 Score = 352 bits (390), Expect = 5e-92 Identities = 1144/1754 (65%), Gaps = 78/1754 (4%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || ||| ||| |||| || || || ||||||||||| ||||| Sbjct 16431 ACGGTGAACTGAATAGGGGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 16490 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTC 212669 || || ||| ||||||| | |||||| |||| |||| | || || Sbjct 16491 AGACCAAGCTT---CCAGCCGGCGAAGTGCATACTGGTGA---TCTTGCCC---ATTGTC 16541 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 |||| | | |||| | ||| |||||||| |||||| ||||| | | Sbjct 16542 GGGTCCTTCATGTGG---------ATGTTAAGGGACTGGGACTGGTCGATGAAGGCACCA 16592 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | ||| || ||||| | | | | |||||| | |||||| ||||||||| | | Sbjct 16593 CGGTCGGCAGCCATCTGAACAACGGTGCGCTGGGATATCTCCCAGACGGTCTTGTACAGA 16652 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTC 212846 | |||| || | || | | |||||||||||| | ||| || | | ||| | Sbjct 16653 GCCTTGACCTCAGCGGGAATGTTGGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATA 16712 Query 212847 AGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGA 212906 | | | |||| | ||| ||| |||||| || | || ||| | || Sbjct 16713 CGGTTCTT---CATGGCATCGGACCACAGGCCCATGTCGACGAGATCCTTCAACAACCAG 16769 Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 ||||| || | |||||| || || | || || | | ||||| | ||| || ||||| Sbjct 16770 GGGTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTAT 16829 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||||||| |||| ||||| | |||| ||| || ||||||||||| Sbjct 16830 GGCTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCA 16889 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 || || | |||||| | ||| |||||||| ||| | | || || | ||||| Sbjct 16890 ACGAGCAAACTGTTGCGCACACCGTGCTCCTTGATCTG-CTCCT----TCAGAG-AGTCC 16943 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || | ||||| |||| | ||| || ||||||||||| |||| | ||| || | | Sbjct 16944 CAA-TCCCAGA--GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATACCCTGG 17000 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 | ||| ||||| ||| | |||||||| ||| | |||||||||||||| ||| Sbjct 17001 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCCCTCCTCCTTGGCCAGCTGAACAGAC 17060 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 ||| ||||||| ||||||||| || || |||| | ||||||| | |||||| Sbjct 17061 ATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACGGGCCTCG 17120 Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATG 213326 || ||| ||| ||||| | | |||| ||||||| || |||||||| |||| Sbjct 17121 GGAGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGA 17180 Query 213327 CCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCA 213385 || ||||| | ||| | || ||| ||| |||| ||| | |||||| |||| Sbjct 17181 CCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCGGGAACGGGGTAGTGGTTGAC 17239 Query 213386 GTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445 || ||||||||||| | |||||| | || | ||||| | | || | || | Sbjct 17240 ATCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGG-- 17297 Query 213446 ATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAG 213499 || ||||| | || || | || || ||||| || | | |||| Sbjct 17298 ----AAGTCGTAGACACCATCGTTGTAGTCAACGAAGGTGGGCAGAGCAAGGGAAGCCAA 17353 Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 |||||| || || ||||| | | | |||||| |||||||| ||||| |||||| Sbjct 17354 GTTGCAGACAGCGACCTCGTCGGGTGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGA 17413 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619 || ||||| || || ||||||| ||||| ||| |||||||| ||||||||| || Sbjct 17414 GCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAG 17473 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTG 213677 |||| ||||| || ||||| ||| | | | || || ||| ||| || | | | Sbjct 17474 CATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGAT--GGCATACCAAAGCTTCTGG 17531 Query 213678 GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTT 213736 ||||||| | || | | | | | | || |||||||| ||||| | | | Sbjct 17532 GCCTTGATG----GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCTC 17587 Query 213737 GAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCC 213795 ||| || | ||| || | | | |||| || || || ||| ||||||||| ||| Sbjct 17588 GAACTCCTCGCCGTAGCAGTCAG-CCAGGCCAGGGCACTCATTGGGGCACATGAGGGTCC 17646 Query 213796 AGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 |||| ||| | |||| |||||||| ||||||||| || |||| ||| || ||| ||| Sbjct 17647 AGTCGGCGTTCTTCTC-GACTCTCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAA 17705 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 ||||| | || | ||| ||| ||| ||| ||||||| || | || || ||| Sbjct 17706 AGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGAACTCGAAG 17765 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCC 213971 | ||| |||||||| ||||| | |||||| || || ||||| || | |||| || ||| Sbjct 17766 ACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGTTGCCACCC 17825 Query 213972 TGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 || || || | || | || |||| |||| || || | ||| | | ||||| Sbjct 17826 TGATCGACG----TAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTT 17881 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAG--GTTGCTCATGGAG 214085 || |||||||| || || ||||| ||||| | ||| | | | || | | ||| Sbjct 17882 CGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAG 17941 Query 214086 AGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATG 214145 | || |||||||| || ||||||||||||||||||| | | | || || ||| Sbjct 17942 A--CCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATA 17999 Query 214146 CCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGAC 214205 || | || ||| || | | || | | |||||| || |||||| | | Sbjct 18000 CCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGG 18059 Query 214206 GAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTG 214265 | |||| |||||| || |||||| ||| ||| | | |||||| | || | ||| || Sbjct 18060 GTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTG 18119 Query 214266 TAGGTCTCCAGGAC 214279 |||||||| | ||| Sbjct 18120 TAGGTCTCGATGAC 18133 >seq686 Length=266282 Score = 183 bits (202), Expect = 6e-41 Identities = 349/508 (69%), Gaps = 17/508 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || | | ||||||||||| Sbjct 148482 CTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 148541 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||||||| ||||||||||| | || || ||| |||| ||| | |||| | Sbjct 148542 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAGGA 148600 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || ||| |||| ||||| | ||| | | || ||||||||| | || | Sbjct 148601 GGCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAG 148660 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| ||||| ||||| ||||||| ||| |||| ||||| || | | || | Sbjct 148661 CGCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGT 148720 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT-AGAGCAT-----GC 48131 || || | || ||| |||||| | |||||||| | |||| | || Sbjct 148721 CCTCAATG----AC-CTGC----TTGTTGGGGCGGTGCTTGAGGTGAGAGTACAAGAGGC 148771 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||||||||| |||| | || ||||| ||| ||||||| ||||||||||| |||| Sbjct 148772 AGGCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGAC 148831 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||||| || | || |||||||| || || | || |||| || |||||||| Sbjct 148832 CAGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGA 148891 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || || || || || | || |||| || | ||||| || || Sbjct 148892 TACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTGA 148951 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 |||| || |||||||| |||||||| Sbjct 148952 TCCACTTCAGGGCCCAGTCAGCCTTCTT 148979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931521982575360