Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq572 315 1e-80 seq686 167 4e-36 >seq572 Length=609512 Score = 315 bits (348), Expect = 1e-80 Identities = 849/1283 (66%), Gaps = 57/1283 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGG 221475 ||||| |||||||||||||||||||| |||||| |||||||||| || | ||||||||| Sbjct 17064 GTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGATCACG-GGCCTCGGG 17122 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| ||||| || || | || | || || || ||||| || |||| ||| Sbjct 17123 AGACTCGAAAGGCATGCGAAGGGCGAGGAAAGCATCAGCAAGACCCTGGACACCGAGACC 17182 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||| | ||| | | ||||| | ||| || || || ||||| || |||||| Sbjct 17183 AATGGGGCGGTGACGCATGTTGCTGTTGCGA--GCCTCGGGAACGGGGTAGTGGTTGACA 17240 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | ||||| | ||| || | ||| | | |||||| ||||||||| Sbjct 17241 TCAATGATCTTGTTCAAGTTGCGAACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAG 17300 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | | | || || |||| | | || || || | | || |||| | Sbjct 17301 TCGTAGACA---------CCATCGTTGTAG---TCAACGAAGGTGGGCAGAGCAAGGGAA 17348 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACAGAG 221772 |||| ||| || || || |||||||| || | | |||| |||||||| || ||||| Sbjct 17349 GCCAAGTTGCAGACAGCGACCTCGTCGG-GTGCGCAGTACTCAATGATCTCAGTGCAGAG 17407 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || ||| || || |||| || || || |||||| |||||||| ||||| Sbjct 17408 GTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTT 17467 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| ||||| ||||||||| ||||||| | || || | ||| || | Sbjct 17468 GTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAAAGCT- 17526 Query 221893 TCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945 ||||| || | ||| | |||| | | | |||| ||| || ||| || | Sbjct 17527 TCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTACAAGGCCT 17586 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 || ||| || ||||| || ||||||| || ||| ||| |||| Sbjct 17587 CGA---------ACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCATTGGGGCACA 17637 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | || |||||| ||| | | ||| |||| |||||| || || |||||||| || | Sbjct 17638 TGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGAG 17697 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || || || | || || ||||||| ||| | ||| || | || |||| | Sbjct 17698 CGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCATGGTTCTTGCGCAAGTCCATGA 17757 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| || | ||| |||||||| ||||| || |||| || | |||||| || ||||||| Sbjct 17758 ACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAGCGAAAGCGCCAGGACGCTTGT 17817 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAG-AGCGTTG---AAGATGCGAAGGGTCGGTACC 222241 ||||||||||||| || | | || || |||| |||| ||||| | || | Sbjct 17818 TGCCACCCTGATCGACG----TAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATG 17873 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 | ||||| || ||||||||||| ||| || | || ||| | || ||| | Sbjct 17874 ACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCAC---GGATACGG 17930 Query 222302 GCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 || || || || ||||| || || ||||||||||||||| ||||||| ||| Sbjct 17931 TGAGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTG 17990 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| ||||| |||||||| ||||| | || | || || || || |||| ||| Sbjct 17991 TCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGG 18050 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | || || ||||| || || ||||| |||||| || ||| | || ||| Sbjct 18051 CACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGAC 18110 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537 || || | ||| ||||| | ||| | ||| ||| || ||| || | | || || Sbjct 18111 ATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAGATGCCGACTGCAACA 18170 Query 222538 TCTCATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTAC 222595 | |||| ||||| |||||| ||||| || || | |||| ||||||||| Sbjct 18171 -CGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCT--TGAGCAGGTAT 18227 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655 ||| ||||||| |||||||| || ||||| | | || ||||| | | ||| || | | Sbjct 18228 GATCTTTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATG 18287 Query 222656 GCGGCGTCCAGCTCCGACTTGTG 222678 || | ||| ||||| |||||| Sbjct 18288 GCAGAGTCGAGCTCTTCCTTGTG 18310 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | ||||| | ||| || ||| | || Sbjct 16772 GTTAACAACCTGGAACTCGCCGGCAAGAACACGACGTTGGTAGATGTTGGAGGTGTATGG 16831 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||||| |||||| | ||| ||| || |||||||| || || Sbjct 16832 CTCGAAGCACTCGTTGTTGCCCAAGATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAAC 16891 Query 221236 CAGCAGACTGTTGCGCA 221252 |||| ||||||||||| Sbjct 16892 GAGCAAACTGTTGCGCA 16908 >seq686 Length=266282 Score = 167 bits (184), Expect = 4e-36 Identities = 326/489 (67%), Gaps = 5/489 (1%) Strand=Plus/Minus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| |||||||||||| | ||| | | | || | | |||| ||||| |||||| Sbjct 148967 TGGGCCCTGAAGTGGATCAGCGATGAGAACTCCTCCTTCGCCCAGCGTCTGGTTGCCTTT 148908 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || ||||| ||||| ||||| ||||||||| | ||||| ||||||| ||||||||| || Sbjct 148907 GCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTTTGGCTCAAGAAG 148848 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| || ||| ||| ||||||||||||||| | | ||||||||||| Sbjct 148847 CGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTT 148788 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG-A 26072 |||| || ||||||||||| | ||| | || | || || || |||| | Sbjct 148787 CACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCACC----GCCCCAACAAGCA 148732 Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | | | | |||||| || || || |||| ||| ||||||| | Sbjct 148731 GGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTCACTGAGGC 148672 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | ||||||||| || | |||| || |||||||||| || Sbjct 148671 TCTGCCCTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGT 148612 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTT 26252 ||||||| || ||| | || || || || |||||| | | ||||| || Sbjct 148611 TGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTT 148552 Query 26253 CGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGG 26312 |||||| ||||| ||||| || | | || ||||||||||||||||| ||| | |||| Sbjct 148551 CGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTCGC 148492 Query 26313 CGACTATCA 26321 ||||| || Sbjct 148491 TGACTACCA 148483 Score = 86.0 bits (94), Expect = 1e-11 Identities = 175/258 (68%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||||||||| ||||||||||| Sbjct 149380 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 149321 Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| | | || ||| || | || || Sbjct 149320 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 149261 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || || ||||| || |||||||| || |||| | Sbjct 149260 CACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGTCGAGCGC 149201 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| || | || || ||| | ||||| || |||||||| |||||||| || Sbjct 149200 TTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 149141 Query 25714 GAAAATGTGCACTCTGAG 25731 || || | ||||||||| Sbjct 149140 GAGAACATCCACTCTGAG 149123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928834013789760