Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq356 87.8 1e-11 >seq356 Length=254992 Score = 87.8 bits (96), Expect = 1e-11 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 |||||||||||| || ||||| || || ||| || | ||| || || ||| | || Sbjct 83733 ACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTC-GCTCAAAG 83791 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | |||||| | ||||||||||| || |||||||| || || || ||||| || | Sbjct 83792 TGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATAC 83851 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | |||||||| || ||||| || || ||||| || |||| || | | || || Sbjct 83852 CCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCA 83911 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || || ||||| ||||| || || Sbjct 83912 A-CGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTG 83951 Score = 86.0 bits (94), Expect = 4e-11 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTAC-AAGATGA-AGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 ||||||||||| || ||| || |||| ||| ||| ||| || || || | || | Sbjct 84190 CGAAGACGGAGAACCAAGTGGAGAGTGGACTC-CTTCTGAATG-TTGTAGTCGGACAGGG 84247 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||| ||||||||||| |||||||| || | ||| || || ||||| || || | Sbjct 84248 TGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGC 84307 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||| || |||||||| |||||| || |||||||||| | | | || Sbjct 84308 CCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGA-CCTCG 84366 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 ||||| || || || || ||||| ||||| |||| Sbjct 84367 AGGGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 84400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268139350682492