Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq356 87.8 1e-11
>seq356
Length=254992
Score = 87.8 bits (96), Expect = 1e-11
Identities = 155/221 (70%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
|||||||||||| || ||||| || || ||| || | ||| || || ||| | ||
Sbjct 83733 ACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTC-GCTCAAAG 83791
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | |||||| | ||||||||||| || |||||||| || || || ||||| || |
Sbjct 83792 TGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATAC 83851
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728
| |||||||| || ||||| || || ||||| || |||| || | | || ||
Sbjct 83852 CCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCA 83911
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || || || || || ||||| ||||| || ||
Sbjct 83912 A-CGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTG 83951
Score = 86.0 bits (94), Expect = 4e-11
Identities = 152/214 (71%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTAC-AAGATGA-AGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609
||||||||||| || ||| || |||| ||| ||| ||| || || || | || |
Sbjct 84190 CGAAGACGGAGAACCAAGTGGAGAGTGGACTC-CTTCTGAATG-TTGTAGTCGGACAGGG 84247
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | | ||| ||||||||||| |||||||| || | ||| || || ||||| || || |
Sbjct 84248 TGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGC 84307
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728
| ||||| || |||||||| |||||| || |||||||||| | | | ||
Sbjct 84308 CCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGA-CCTCG 84366
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
||||| || || || || ||||| ||||| ||||
Sbjct 84367 AGGGTGATGGTCTTGCCAGTGAGCGTCTTGACGA 84400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268139350682492
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |