Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq572 141 1e-28 seq686 109 7e-19 seq95 87.8 2e-12 >seq572 Length=609512 Score = 141 bits (156), Expect = 1e-28 Identities = 601/930 (65%), Gaps = 41/930 (4%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT--TCAACGGCTCGATGGCATCCTC 75202 ||||| || |||| ||||| || |||| | || || |||| ||| ||||||| | Sbjct 18256 TACTTCGGCTTCAAGACCCTGGA-AAGATCATACCTGCTCAA--GCTTGATGGCAAGATT 18200 Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262 || | || ||| ||||| ||||||| || ||| |||||||| || || || | Sbjct 18199 GCCGAGAGACCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTC 18140 Query 75263 GATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACAC 75320 || ||| | ||||| ||| || |||||| |||| | | ||| ||||| | | Sbjct 18139 GAGCGCGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCC 18082 Query 75321 CAACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCC 75379 | || |||||||| |||||||| || || | ||| |||| |||||||| ||| | Sbjct 18081 CCACACTCTTCAACGCTGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGAC 18023 Query 75380 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 75439 | ||||| ||||| || | |||||||| | || || | | || || ||||| Sbjct 18022 ATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCC 17963 Query 75440 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 75499 ||| |||||| || ||||| | || || | | | |||| | || |||| Sbjct 17962 AAGATGGCTGGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCCACTGGCTCCTATATT 17903 Query 75500 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559 || || || || || | ||| | ||||| |||||||| || |||||| ||| Sbjct 17902 GCAGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACT 17843 Query 75560 GCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTG 75613 || ||||| || |||| | || ||||| || | |||| ||||| | Sbjct 17842 GCTCGCTACGTCGATCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATCTACCTT 17786 Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAA 75673 || || ||||| ||||| || | |||||| | || || || ||||| || | || Sbjct 17785 GAGCCCTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAG 17726 Query 75674 GAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGT--GGATTCCAGACCTTTTCATGAAG 75730 |||| || ||| | || || |||| || || | |||| || || || ||||||||| Sbjct 17725 GAGG-TCCGTGCCCGTGACCT--TTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAG 17669 Query 75731 CGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCC 75790 | || ||| || | | ||| | || | || || | || || || || | Sbjct 17668 AGAGTCGAGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCT 17609 Query 75791 GACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA---GAGG---AGGGT 75844 ||| || |||||||| || ||| | ||| ||||| || |||| ||||| Sbjct 17608 GACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGT 17549 Query 75845 AGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGAC 75903 | ||| ||| | | || | | || | ||||| | || || ||| | | ||||| Sbjct 17548 CG---CAA---GACCAT-CAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGAC 17496 Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 |||||||| | || | |||||||||||||||||| ||| ||||| ||||| || Sbjct 17495 CGAGACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAA 17436 Query 75964 GAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA 76023 ||| | ||||| ||| ||||| || || ||||| || || | |||||| | Sbjct 17435 GAACCTCGGAACTATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCACC 17376 Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATC 76053 || ||| ||||| ||||| ||||| || Sbjct 17375 CGACGAGGTCGCTGTCTGCAACTTGGCTTC 17346 >seq686 Length=266282 Score = 109 bits (120), Expect = 7e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 |||||||||| |||| || |||| ||||| ||| ||||||||||||||| ||| | Sbjct 148935 CTCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGC 148876 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || | | || | |||| | |||||||| ||||||||||| || || |||||| || Sbjct 148875 TTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAA 148816 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || ||||| || |||||||| ||| || |||||| Sbjct 148815 CGAGCTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGCC 148773 >seq95 Length=35920 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || || |||||||| || |||||| |||| || || ||||| || || ||||| | Sbjct 25384 GGCGCAAAGATCCCTCGTGGCGCCATTCTTGCTGGACCCCCAGGAACCGGTAAGACATTG 25443 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAA 175393 || ||| |||| ||| || || || ||| || ||| || || | || || | | Sbjct 25444 CTTGCCAAGGCCACCGCCGGCGAGTCTGGTGTTCCCTTCTTC-AGCG-TCAGCGGTTCCG 25501 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | ||||| ||||||||||| ||||| ||| | ||| || || || || |||| || | Sbjct 25502 AGTTTGTCGAGATGTTTGTCGGTGTCGGTCCTTCAAGAGTGCGAGACCTGTTTGCAAATG 25561 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 ||||| | | | || || || ||||||| |||||||| || || Sbjct 25562 CCCGCAAGAGTGCCCCCTGCATCATCTTCATCGATGAGATCGACGC 25607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562672335520