Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq572 141 1e-28
seq686 109 7e-19
seq95 87.8 2e-12
>seq572
Length=609512
Score = 141 bits (156), Expect = 1e-28
Identities = 601/930 (65%), Gaps = 41/930 (4%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT--TCAACGGCTCGATGGCATCCTC 75202
||||| || |||| ||||| || |||| | || || |||| ||| ||||||| |
Sbjct 18256 TACTTCGGCTTCAAGACCCTGGA-AAGATCATACCTGCTCAA--GCTTGATGGCAAGATT 18200
Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262
|| | || ||| ||||| ||||||| || ||| |||||||| || || || |
Sbjct 18199 GCCGAGAGACCCCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGATAACGTC 18140
Query 75263 GATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACAC 75320
|| ||| | ||||| ||| || |||||| |||| | | ||| ||||| | |
Sbjct 18139 GAGCGCGTCATCGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCC 18082
Query 75321 CAACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCC 75379
| || |||||||| |||||||| || || | ||| |||| |||||||| ||| |
Sbjct 18081 CCACACTCTTCAACGCTGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGAC 18023
Query 75380 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 75439
| ||||| ||||| || | |||||||| | || || | | || || |||||
Sbjct 18022 ATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCC 17963
Query 75440 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 75499
||| |||||| || ||||| | || || | | | |||| | || ||||
Sbjct 17962 AAGATGGCTGGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCCACTGGCTCCTATATT 17903
Query 75500 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559
|| || || || || | ||| | ||||| |||||||| || |||||| |||
Sbjct 17902 GCAGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCTTTAACAACACT 17843
Query 75560 GCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTG 75613
|| ||||| || |||| | || ||||| || | |||| ||||| |
Sbjct 17842 GCTCGCTACGTCGATCAGGGTGGCAACAAGCGTCCT---GGCGCTTTCGCTATCTACCTT 17786
Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAA 75673
|| || ||||| ||||| || | |||||| | || || || ||||| || | ||
Sbjct 17785 GAGCCCTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACCATGGCAAGGAG 17726
Query 75674 GAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGT--GGATTCCAGACCTTTTCATGAAG 75730
|||| || ||| | || || |||| || || | |||| || || || |||||||||
Sbjct 17725 GAGG-TCCGTGCCCGTGACCT--TTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAG 17669
Query 75731 CGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCC 75790
| || ||| || | | ||| | || | || || | || || || || |
Sbjct 17668 AGAGTCGAGAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCTGGCCTGGCT 17609
Query 75791 GACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA---GAGG---AGGGT 75844
||| || |||||||| || ||| | ||| ||||| || |||| |||||
Sbjct 17608 GACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAGGGCAAGGGT 17549
Query 75845 AGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGAC 75903
| ||| ||| | | || | | || | ||||| | || || ||| | | |||||
Sbjct 17548 CG---CAA---GACCAT-CAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGAC 17496
Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963
|||||||| | || | |||||||||||||||||| ||| ||||| ||||| ||
Sbjct 17495 CGAGACTGGCAACCCCTTCATGCTTTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAA 17436
Query 75964 GAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA 76023
||| | ||||| ||| ||||| || || ||||| || || | |||||| |
Sbjct 17435 GAACCTCGGAACTATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCACC 17376
Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATC 76053
|| ||| ||||| ||||| ||||| ||
Sbjct 17375 CGACGAGGTCGCTGTCTGCAACTTGGCTTC 17346
>seq686
Length=266282
Score = 109 bits (120), Expect = 7e-19
Identities = 122/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126
|||||||||| |||| || |||| ||||| ||| ||||||||||||||| ||| |
Sbjct 148935 CTCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGC 148876
Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186
|| | | || | |||| | |||||||| ||||||||||| || || |||||| ||
Sbjct 148875 TTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAA 148816
Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || || ||||| || |||||||| ||| || ||||||
Sbjct 148815 CGAGCTCATCTCCCGTGACGAGGGTCTTCACACCGACTTTGCC 148773
>seq95
Length=35920
Score = 87.8 bits (96), Expect = 2e-12
Identities = 157/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
|| || |||||||| || |||||| |||| || || ||||| || || ||||| |
Sbjct 25384 GGCGCAAAGATCCCTCGTGGCGCCATTCTTGCTGGACCCCCAGGAACCGGTAAGACATTG 25443
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCG--CAA 175393
|| ||| |||| ||| || || || ||| || ||| || || | || || | |
Sbjct 25444 CTTGCCAAGGCCACCGCCGGCGAGTCTGGTGTTCCCTTCTTC-AGCG-TCAGCGGTTCCG 25501
Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453
| ||||| ||||||||||| ||||| ||| | ||| || || || || |||| || |
Sbjct 25502 AGTTTGTCGAGATGTTTGTCGGTGTCGGTCCTTCAAGAGTGCGAGACCTGTTTGCAAATG 25561
Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499
||||| | | | || || || ||||||| |||||||| || ||
Sbjct 25562 CCCGCAAGAGTGCCCCCTGCATCATCTTCATCGATGAGATCGACGC 25607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596562672335520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |