Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq69 358 9e-94 seq356 181 1e-40 seq863 136 5e-27 seq893 113 6e-20 seq572 96.9 5e-15 seq95 93.3 6e-14 >seq69 Length=209040 Score = 358 bits (396), Expect = 9e-94 Identities = 789/1181 (67%), Gaps = 17/1181 (1%) Strand=Plus/Minus Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 ||||||| ||||| || || ||||||| || || || || ||||| || |||||||| | Sbjct 14106 CAGTTGTCACTGTTCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCG 14047 Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830 | ||||| || || ||| ||| | || ||||| || || || || || || |||| Sbjct 14046 GTCTCATTGCCGGCCTCAACGTCCTTCGTATCATCAACGAGCCTACCGCTGCCGCTATTG 13987 Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | || ||||| |||||||| || | || || || | ||||| ||||| |||| Sbjct 13986 CCTACGGTCTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTG 13927 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 ||||||| || ||||| || || || | ||||| | || || ||||| || ||| | | Sbjct 13926 GTGGTACTTTCGATGTGTCTCTCCTGACCATTGAGGAGGGCATTTTCGAGGTCAAGTCCA 13867 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTG 196009 | |||||||| ||||| | |||||||| || ||||| ||||| || || || | Sbjct 13866 CCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCG 13807 Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG- 196068 || | |||||| || ||| | ||||| ||| | || || | | || || || Sbjct 13806 TC-AACGAGTTCAAGCGCAAGCACAAGAAGGATCTGTCCTCTAACGCCCGCGCCCTGCGC 13748 Query 196069 -------TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTC 196121 || | ||||| || || |||||||| || || || || || | || | Sbjct 13747 NNNNNNNNNNTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCC 13688 Query 196122 AAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCC 196181 | || | |||||||| || |||| || || || |||||||| || | || |||| Sbjct 13687 AGACCTCCATCGAGATTGACTCCCTGTTCGAGGGTATCGACTTCTACACCTCCATCACCC 13628 Query 196182 GTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAAC 196241 |||| || || || ||| | | || |||| | ||| | || || || | Sbjct 13627 GTGCTCGCTTCGAGGAGCTCTGCCAGGACCTGTTCCGCTCTACTATCCAGCCCGTCGACC 13568 Query 196242 AAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAG 196301 || || ||||| ||| | || ||||| |||| | || || ||||| || |||| Sbjct 13567 GCGTCCTCACCGACGCCAAGGTCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAG 13508 Query 196302 GATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATT 196361 | || |||||||| || | || || | | || || |||||| || || Sbjct 13507 GTTCCACCCGTATCCCCCGTGTCCAGAAGCTCATCTCCGACTACTTCAACGGCAAGGAGC 13448 Query 196362 TAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTA 196421 ||||| | |||||||| ||||| || ||||| || ||||| ||||| ||||| || | Sbjct 13447 CCAACAAGTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCCGCCA 13388 Query 196422 TTCTCTCAGGTG-----TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGC 196476 |||| || |||| | | | | || | ||||| || || || |||||||| Sbjct 13387 TTCTGTCCGGTGACACCTCCTCCAAGAGCACCAACGAGATC--CTTCTTCTCGATGTTGC 13330 Query 196477 ACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAA 196536 || | ||||| ||| | || || || ||||| | ||||| || | ||| | || Sbjct 13329 CCCTCTGTCCCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATTCCCCGCAA 13270 Query 196537 CACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGG 196596 ||| || || || || |||||| | ||||| || || | ||||| || || || || Sbjct 13269 CACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCCGG 13210 Query 196597 TGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG 196656 ||| | || || || || || || || ||| || | ||||| ||| | || || || Sbjct 13209 TGTCCTCATCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTCGG 13150 Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716 | ||||| | || || ||||| | || ||| | |||||||| |||||| | || Sbjct 13149 CAAGTTCGAGCTTACCGGCATTCCCCCCGCTCCCCGCGGTGTTCCCCAGATTGAGGTCAC 13090 Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776 |||||| | ||||| || |||||| | |||||| | || | || |||| | | ||||| Sbjct 13089 CTTCGACCTTGACGCCAACGGAATTATGAACGTCTCCGCCGTCGAGAAGGGTACCGGCAA 13030 Query 196777 ATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836 || | |||||||| || ||||| |||||||| || ||||| |||||||| || || || Sbjct 13029 GTCCAACAAGATTGTCATCACCAACGACAAGGGCCGCCTTTCCAAGGAGGACATCGAGCG 12970 Query 196837 TATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 ||| || || || || |||| || ||| || || |||| Sbjct 12969 CATGCTTGCTGAGGCCGAGAAGTTCAAGGATGAGGATGAGG 12929 >seq356 Length=254992 Score = 181 bits (200), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || || || || |||||||| || || || || || ||||||||||| | Sbjct 84187 GTGGTATGCAGATTTTCGTCAAGACCCTTACCGGCAAGACGATTACGCTCGAGGTTGAAT 84128 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | |||||||| || || ||| |||| | ||||| ||||||||||| || ||||| |||| Sbjct 84127 CTTCAGACACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCCG 84068 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | || || || || || |||||||| ||||| || ||||| | |||| Sbjct 84067 ACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCGGATT 84008 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| |||| |||||||| ||||| || || || || | || || |||||| Sbjct 84007 ACAACATTCAGAAGGAGTCAACTCTGCATCTCGTCCTGCGCCTGCGTGGTGGT 83955 Score = 170 bits (188), Expect = 3e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || ||||| |||||||| ||||| || || || ||||||||| | || || Sbjct 84672 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATCGATAACGTGAAGTCC 84613 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| ||||| || ||||||||||| || || ||||| ||||| || Sbjct 84612 AAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 84553 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| || || || || |||||| | || |||||| |||| ||||||||||| || ||| Sbjct 84552 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTCCAC 84493 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 | ||||| | ||||| |||||| Sbjct 84492 TTGGTTCTCCGCCTTCGTGGTGGT 84469 Score = 168 bits (186), Expect = 9e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || || || ||||| || || |||||||||||||| ||||| || || || ||||| Sbjct 84398 GTCAAGACGCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGATACTATCGAC 84339 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 || |||| | |||||||| |||||||| ||||| || || || ||||| || | || Sbjct 84338 AATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGATC 84279 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 |||||||| || || ||||| ||||| || ||||| | || |||||| |||| |||||| Sbjct 84278 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAG 84219 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || ||||| ||| | ||||| | ||||| |||||| Sbjct 84218 TCCACTCTCCACTTGGTTCTCCGTCTTCGCGGTGGT 84183 >seq863 Length=517823 Score = 136 bits (150), Expect = 5e-27 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||| ||||| |||||||| Sbjct 7259 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 7318 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| ||| Sbjct 7319 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 7378 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTC 172029 || || || || || || || || ||||| || || || || |||||| Sbjct 7379 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTC 7426 >seq893 Length=292136 Score = 113 bits (124), Expect = 6e-20 Identities = 241/356 (68%), Gaps = 3/356 (1%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || |||| | ||| | ||| |||||||||||| || || | | | | Sbjct 50337 CCCGAGGAGGTTTCCGCCATGATCTTGGGCAAGATGAAGGAGGTCGCCGAGGCCTACCTT 50278 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || | || | | || || || ||||| || || ||||||| || || || Sbjct 50277 GGCAAGAAGGTCACCCACGCCGTCGTCACTGTTCCCGCCTACTTCAACGACAACCAGCGC 50218 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 ||||| || ||||| |||| || ||||| || || ||| ||| | ||| |||| || Sbjct 50217 CAGGCCACCAAGGATGCTGGTGTCATTGCCGGACTTAACGTTCTCCGCATTGTCAACGAG 50158 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || || ||||| ||||||| | ||| || | | || | Sbjct 50157 CCCACCGCCGCCGCTATCGCCTACGGTCTTGACAAGACCGAGGGTGA-GCGCCAGATC-A 50100 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | | ||| || || ||||||||||| || ||||| || ||||| || || ||| Sbjct 50099 TCG-TCTACGACCTTGGTGGTGGTACTTTCGATGTTTCCCTTCTGTCCATCGACCAGGGT 50041 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || |||||| || ||||| || || | |||||||| |||||||| Sbjct 50040 GTCTTCGAGGTTCTGGCTACCGCCGGTGACACCCACTTGGGTGGTGAGGATTTCGA 49985 >seq572 Length=609512 Score = 96.9 bits (106), Expect = 5e-15 Identities = 457/711 (64%), Gaps = 29/711 (4%) Strand=Plus/Minus Query 78050 CACGCAACACCTACTTTGTTTAATGCAGGTACTCCCC-GTCCACAGATGTCATCTTGTTT 78108 ||||| | || || | || || || ||||| || | || | ||| |||| || || || Sbjct 18091 CACGCCTCCCCCACACTCTTCAACGCTGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTT 18033 Query 78109 CCTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGAG-TGTG 78167 ||| | | | ||||| ||||||||| | ||||| |||| || |||| ||| || | Sbjct 18032 CCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCTACGACACCCTCA-AGACCTGCG 17974 Query 78168 CTCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACA 78227 | ||| || ||| ||||||||| || ||||| | |||| | | ||||| | Sbjct 17973 CCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCTCACCGTATCCGTGCCACTG 17914 Query 78228 AGTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTAT 78287 ||| ||| ||| || || || || | || | ||||| |||||| | || | Sbjct 17913 GCTCCTATATTGCAGGCACCAACGGCACCTCGAACGGTGTCATTCCCATGCTTCGTGTCT 17854 Query 78288 TCAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAG------GGGTCATTCG 78341 | || || || ||||| ||| | || |||| | | ||| || | |||| Sbjct 17853 TTAACAACACTGCTCGCTACGTCGATCA---GGGTGGCAACAAGCGTCCTGGCGCTTTCG 17797 Query 78342 CTATGTACCTTGAACCTTGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACC 78401 |||| |||||||| || ||||||||||| || | || || |||| | || |||| Sbjct 17796 CTATCTACCTTGAGCCCTGGCACGCCGACGTCTTCGAGTTCATGGACTTGCGCAAGAACC 17737 Query 78402 AGGGTGACGAGGAAGCTCGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTT 78461 | || | ||||| | || | | || | ||| ||| | ||||| || ||||| | Sbjct 17736 ATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATCCCCGATCTGT 17677 Query 78462 TTATGAAGAGAGTTGAGGAAGGA-GGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAG 78520 | ||||||||||| || |||| | | | ||| | || | || || || || Sbjct 17676 TCATGAAGAGAGTCGA-GAAGAACGCCGACTGGACCCTCATGTGCCCCAATGAGTGCCCT 17618 Query 78521 GGTCTTTCAGATGTATACGGGGAAGAATTCGAAAAATTGTACACTAAATACGA-----AG 78575 || || | || ||||| || || ||||| |||||| || ||||| || Sbjct 17617 GGCCTGGCTGACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAG 17558 Query 78576 AGGAAGGTCTCGCTATTAAGACAATTGATGCATCTGAA-CTATGGAAAGCTATTATCAAA 78634 | |||| |||| ||||| || | || | ||| || ||| | || || || | Sbjct 17557 GGCAAGG-GTCGC----AAGACCATCAAGGC-CCAGAAGCTTTGGTATGCCATCCTCGAG 17504 Query 78635 AGTCAAACAGAGACCGGCACCCCGTATATGCTATACAAAGACAGCTG-TAACAGAAAGTC 78693 ||| || ||||| |||| ||| | ||||| ||||| || |||| ||| | ||| Sbjct 17503 GCTCAGACCGAGACTGGCAACCCCTTCATGCTTTACAAGGA-TGCTGCCAACCGCAAGAG 17445 Query 78694 TAACCAAAAGAACCTAGGTGTCATCAAAAGCTCTAACCTTTGCACAGAAAT 78744 ||||| |||||||| || ||| ||||| ||||| ||||| || || Sbjct 17444 CAACCAGAAGAACCTCGGAACTATCCGCAGCTCCAACCTCTGCACTGAGAT 17394 >seq95 Length=35920 Score = 93.3 bits (102), Expect = 6e-14 Identities = 271/404 (67%), Gaps = 19/404 (5%) Strand=Plus/Plus Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608 ||||| ||||| || |||| || || |||| || || ||||| || | || || Sbjct 25393 ATCCCTCGTGGCGCCATTCTTGCTGGACCCCCAGGAACCGGTAAGACATTGCTTGCCAAG 25452 Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATC 198665 || | ||| || || || |||| ||||| |||||| | || |||| ||||||| || Sbjct 25453 GCCACCGCCGGCGAGTCTGGTGTTCCCTT-CTTCAGCG-TCAGCGGTTCCGAGTTTG-TC 25509 Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725 |||||||| || ||||| ||| || | || || || || |||| | || || | Sbjct 25510 GAGATGTTTGTCGGTGTCGGTCCTTCAAGAGTGCGAGACCTGTTTGCAAATGCCCGCAAG 25569 Query 198726 AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGT--AAGAAGCGTGGTG 198783 | | || || ||||||||||| |||||||| ||||| ||||| | ||| || | Sbjct 25570 AGTGCCCCCTGCATCATCTTCATCGATGAGATCGACGCCATTGGTCGATCAAGACAGGAG 25629 Query 198784 G--AACTACTACACCTGGTAATGATGAGCGTG-AGCAGACGATTAACCAGCTTCTCACTG 198840 | ||| | ||| || || ||||| | |||| || | |||||| | | || | Sbjct 25630 GGTAAC-CGAATGGGTGGCAACGACGAGCGCGAAGCA-ACTCTGAACCAGATCTTGACCG 25687 Query 198841 AGATGGATGGTTTTGACA---ATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAGGA 198897 ||||||| ||||| ||| | ||| | || | || || | |||| || || || Sbjct 25688 AGATGGACGGTTTCAACACCCAGGAG-CAGG--TTGTTGTCCTCGCTGGCACCAACAGAG 25744 Query 198898 TTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGAC 198941 || ||||| || | || ||| | ||||||||||| |||||| Sbjct 25745 CCGACATCCTTGACAAGGCGCTGATGCGTCCCGGTCGTTTCGAC 25788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657854760572880