Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq134 120 9e-22
seq572 114 4e-20
seq686 104 7e-17
seq673 98.7 3e-15
>seq134
Length=182282
Score = 120 bits (132), Expect = 9e-22
Identities = 188/265 (71%), Gaps = 8/265 (3%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||| || || || || ||||| ||||| || |
Sbjct 94234 CTTGACAAGACGACGCTGGATGTAACCGGTCTCAGCGGTCTTGACAGCGGTATCGATCAA 94175
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| | | |||| |||| || |||||||| | || || ||| || || | | |
Sbjct 94174 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAATTCACTAGG-CGTGAGACCACGGAGAT 94116
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| |||| ||||||||||| ||||||||||| | |||| ||| || || || ||||
Sbjct 94115 ATGAGTTCTCGACGAAACCACGAGCCTCGGGCGAGTAGTCGTCCTTTGTGAAATGCGGCA 94056
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCA 302818
||| | || || | ||| | || || |||||||| || ||| | ||||||| |||
Sbjct 94055 AGGTGCGGTACTTGAAACCGAAAGGAATGCGCTTTCCTTCGACGATTTGCTGTCCGACCA 93996
Query 302819 GGCACGAAATCATCTGCGAAATATT 302843
|| | | ||||||| ||||| ||
Sbjct 93995 GG---GCAGTCATCTGGGAAATGTT 93974
>seq572
Length=609512
Score = 114 bits (126), Expect = 4e-20
Identities = 559/882 (63%), Gaps = 13/882 (1%)
Strand=Plus/Plus
Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685
||| ||| || | |||||| ||| ||||| || || ||| || || | |||||||
Sbjct 17380 CGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCT 17439
Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745
|||| || | ||| |||||||||||| || ||| | ||| | || ||||| |||
Sbjct 17440 GGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCT 17499
Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805
| || || || || ||| || | |||| || || |||| |||| |
Sbjct 17500 GAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCT 17559
Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865
| ||| || ||| |||| | | | ||||| ||||| || ||| ||| ||||
Sbjct 17560 CGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAG 17619
Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAA 155922
|||||| || |||||| | || | ||| || || ||| | | || ||| |
Sbjct 17620 GGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACT---CTCTTCATGA 17676
Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982
| | ||| ||| | ||| ||||||||| | || |||||| | ||| |
Sbjct 17677 ACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCAT 17736
Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042
| ||||| || | || | ||| || | || | || ||||| || || ||||
Sbjct 17737 GGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAG 17796
Query 156043 CAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099
| ||| ||| | |||| ||||||||||| || || |||||||| || || ||||
Sbjct 17797 CGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGA 17856
Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159
||| ||||| ||||| | ||| || || ||||| ||||| || ||||| || ||||
Sbjct 17857 CACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAG 17916
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCG 156218
| || | | ||| | || ||||| ||||| | |||| || || || |||
Sbjct 17917 TGGCACGGATACGGTGAGCGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATGGCG 17975
Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278
|| ||| | || | | | ||||| |||||||| || || | ||| | || ||
Sbjct 17976 CAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAG 18035
Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338
|| ||| | || | || || ||||||||||| ||||| || | || || |
Sbjct 18036 CATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTG 18095
Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTG 156397
|| |||| | ||||| | ||| ||||| | | ||| | ||| |||| |
Sbjct 18096 AAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAG 18155
Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457
|| | || | || | ||| ||| ||||| || | ||| ||||| |||||||
Sbjct 18156 -ATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG 18214
Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
|| ||||||| | |||||| || || || ||||| ||
Sbjct 18215 CTTGAGCAGGTATGATCTTTCCAGGGTCTTGAAGCCGAAGTA 18256
>seq686
Length=266282
Score = 104 bits (114), Expect = 7e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567
||||| ||||| ||||| | || ||||| || || ||||| ||||| || ||| ||
Sbjct 148922 CGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATC 148863
Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627
|||||||| || ||||||||| | | ||||| ||| || || ||||| || || ||
Sbjct 148862 TTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCC 148803
Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657
| ||||||| ||||||||||| ||||||
Sbjct 148802 CGTGACGAGGGTCTTCACACCGACTTTGCC 148773
>seq673
Length=46916
Score = 98.7 bits (108), Expect = 3e-15
Identities = 338/515 (66%), Gaps = 24/515 (5%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|| || || | |||||| |||||||||||||| || |||||||||||||| ||||| |||
Sbjct 30797 GCGCCATGAGCAATCATGCAATCACGCTCCATCTCTCCGAAACGAAGACCTCCATCACGA 30738
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAGGACC----GATGGAGCGG 251598
|| | |||||| |||| || | || | ||| | | || || || | |||||
Sbjct 30737 GCACGACCCTCCACAGGTTGCCTGGTCATGATCTGAACA--GGTCCACGCGCACGAGCGT 30680
Query 251599 CTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAG 251658
|| ||| || | ||||| || |||||||||||| | | || || | ||||
Sbjct 30679 GAATCTTG----TCGTCCACCATGTGGCGCAGACGCTGGTAGTAAGTCGGTCCAAAGAAG 30624
Query 251659 AT----GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATT 251714
| ||||| || || || ||||| | | || ||||| | ||| ||| |
Sbjct 30623 ACCTGGGCTCGCAGC---TTCCTG-CCAGTGTGGCCATTGTACATGATCTCGAATCCTCT 30568
Query 251715 AGATTCATAACCAAGTT-TCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAA 251773
|||| ||| || | | || | | ||| | | | | | | || || | |
Sbjct 30567 CGATTGATATCCTTGATCTCGGAGGAGCTGCGAGACTGAGTCGACTGTCACATCTG-TGA 30509
Query 251774 AACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTT 251833
|| |||| |||| || | | ||| || || | ||||||| | | |||
Sbjct 30508 AAGGGGTGGCGTCGCCCTCCATTCCCTTTAATGTCGAGACTTTGCTGAGTAAACACTCGA 30449
Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893
||| ||||| || ||||||||| ||||| || || ||||||||||| ||||| ||
Sbjct 30448 TCAAGTGGGCAATGGTCATACGAGACGGAATTGCGTGAGGATTGATGATAATGTCCGGCG 30389
Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCC 251952
| | || || | || ||||||||||| | || | | |||| || ||||| || |||
Sbjct 30388 TGATGCCCTCGCCGGTAAAGGGCATATCTTCTTGC-CGATAAGTGACACCAATGGTACCC 30330
Query 251953 TTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|| || |||||||| || ||||||||||||||
Sbjct 30329 TTCTGGCCGTGACGTGAGGCAAACTTATCACCAAT 30295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471800081231073
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |