Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq134 120 9e-22 seq572 114 4e-20 seq686 104 7e-17 seq673 98.7 3e-15 >seq134 Length=182282 Score = 120 bits (132), Expect = 9e-22 Identities = 188/265 (71%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||| || || || || ||||| ||||| || | Sbjct 94234 CTTGACAAGACGACGCTGGATGTAACCGGTCTCAGCGGTCTTGACAGCGGTATCGATCAA 94175 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | | |||| |||| || |||||||| | || || ||| || || | | | Sbjct 94174 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAATTCACTAGG-CGTGAGACCACGGAGAT 94116 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| |||| ||||||||||| ||||||||||| | |||| ||| || || || |||| Sbjct 94115 ATGAGTTCTCGACGAAACCACGAGCCTCGGGCGAGTAGTCGTCCTTTGTGAAATGCGGCA 94056 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCA 302818 ||| | || || | ||| | || || |||||||| || ||| | ||||||| ||| Sbjct 94055 AGGTGCGGTACTTGAAACCGAAAGGAATGCGCTTTCCTTCGACGATTTGCTGTCCGACCA 93996 Query 302819 GGCACGAAATCATCTGCGAAATATT 302843 || | | ||||||| ||||| || Sbjct 93995 GG---GCAGTCATCTGGGAAATGTT 93974 >seq572 Length=609512 Score = 114 bits (126), Expect = 4e-20 Identities = 559/882 (63%), Gaps = 13/882 (1%) Strand=Plus/Plus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | |||||| ||| ||||| || || ||| || || | ||||||| Sbjct 17380 CGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCT 17439 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | ||| |||||||||||| || ||| | ||| | || ||||| ||| Sbjct 17440 GGTTGCTCTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCT 17499 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || || || ||| || | |||| || || |||| |||| | Sbjct 17500 GAGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCT 17559 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 | ||| || ||| |||| | | | ||||| ||||| || ||| ||| |||| Sbjct 17560 CGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCAG 17619 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAA 155922 |||||| || |||||| | || | ||| || || ||| | | || ||| | Sbjct 17620 GGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACT---CTCTTCATGA 17676 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982 | | ||| ||| | ||| ||||||||| | || |||||| | ||| | Sbjct 17677 ACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCAT 17736 Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042 | ||||| || | || | ||| || | || | || ||||| || || |||| Sbjct 17737 GGTTCTTGCGCAAGTCCATGAACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATAG 17796 Query 156043 CAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099 | ||| ||| | |||| ||||||||||| || || |||||||| || || |||| Sbjct 17797 CGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAAGA 17856 Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159 ||| ||||| ||||| | ||| || || ||||| ||||| || ||||| || |||| Sbjct 17857 CACGAAGCATGGGAATGACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGAGCCAG 17916 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCG 156218 | || | | ||| | || ||||| ||||| | |||| || || || ||| Sbjct 17917 TGGCACGGATACGGTGAGCGTTGAGACCAATGCCACCAG-CCATCTTGGAGATCATGGCG 17975 Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAG 156278 || ||| | || | | | ||||| |||||||| || || | ||| | || || Sbjct 17976 CAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGACGAGGAAG 18035 Query 156279 CACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATA 156338 || ||| | || | || || ||||||||||| ||||| || | || || | Sbjct 18036 CATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTG 18095 Query 156339 AAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTG 156397 || |||| | ||||| | ||| ||||| | | ||| | ||| |||| | Sbjct 18096 AAGAACTTGCTGGACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTATCACCCCAG 18155 Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457 || | || | || | ||| ||| ||||| || | ||| ||||| ||||||| Sbjct 18156 -ATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAG 18214 Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| | |||||| || || || ||||| || Sbjct 18215 CTTGAGCAGGTATGATCTTTCCAGGGTCTTGAAGCCGAAGTA 18256 >seq686 Length=266282 Score = 104 bits (114), Expect = 7e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567 ||||| ||||| ||||| | || ||||| || || ||||| ||||| || ||| || Sbjct 148922 CGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATC 148863 Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627 |||||||| || ||||||||| | | ||||| ||| || || ||||| || || || Sbjct 148862 TTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCC 148803 Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||||| ||||||||||| |||||| Sbjct 148802 CGTGACGAGGGTCTTCACACCGACTTTGCC 148773 >seq673 Length=46916 Score = 98.7 bits (108), Expect = 3e-15 Identities = 338/515 (66%), Gaps = 24/515 (5%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || || || | |||||| |||||||||||||| || |||||||||||||| ||||| ||| Sbjct 30797 GCGCCATGAGCAATCATGCAATCACGCTCCATCTCTCCGAAACGAAGACCTCCATCACGA 30738 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAGGACC----GATGGAGCGG 251598 || | |||||| |||| || | || | ||| | | || || || | ||||| Sbjct 30737 GCACGACCCTCCACAGGTTGCCTGGTCATGATCTGAACA--GGTCCACGCGCACGAGCGT 30680 Query 251599 CTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAG 251658 || ||| || | ||||| || |||||||||||| | | || || | |||| Sbjct 30679 GAATCTTG----TCGTCCACCATGTGGCGCAGACGCTGGTAGTAAGTCGGTCCAAAGAAG 30624 Query 251659 AT----GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATT 251714 | ||||| || || || ||||| | | || ||||| | ||| ||| | Sbjct 30623 ACCTGGGCTCGCAGC---TTCCTG-CCAGTGTGGCCATTGTACATGATCTCGAATCCTCT 30568 Query 251715 AGATTCATAACCAAGTT-TCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAA 251773 |||| ||| || | | || | | ||| | | | | | | || || | | Sbjct 30567 CGATTGATATCCTTGATCTCGGAGGAGCTGCGAGACTGAGTCGACTGTCACATCTG-TGA 30509 Query 251774 AACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTT 251833 || |||| |||| || | | ||| || || | ||||||| | | ||| Sbjct 30508 AAGGGGTGGCGTCGCCCTCCATTCCCTTTAATGTCGAGACTTTGCTGAGTAAACACTCGA 30449 Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893 ||| ||||| || ||||||||| ||||| || || ||||||||||| ||||| || Sbjct 30448 TCAAGTGGGCAATGGTCATACGAGACGGAATTGCGTGAGGATTGATGATAATGTCCGGCG 30389 Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCC 251952 | | || || | || ||||||||||| | || | | |||| || ||||| || ||| Sbjct 30388 TGATGCCCTCGCCGGTAAAGGGCATATCTTCTTGC-CGATAAGTGACACCAATGGTACCC 30330 Query 251953 TTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || |||||||| || |||||||||||||| Sbjct 30329 TTCTGGCCGTGACGTGAGGCAAACTTATCACCAAT 30295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800081231073