Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq572 183 4e-40
seq473 179 5e-39
seq818 145 9e-29
seq540 123 3e-22
seq686 114 2e-19
seq166 95.1 1e-13
seq121 91.5 2e-12
>seq572
Length=609512
Score = 183 bits (202), Expect = 4e-40
Identities = 333/489 (68%), Gaps = 15/489 (3%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| ||||||||||| || |||| ||||||||| || |||||||| | || ||||| ||
Sbjct 17825 CTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 17884
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||||||| || | |||| ||| | ||| || | ||| ||| | ||
Sbjct 17885 GGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 17944
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || ||| ||||||||| | ||||| ||||| ||||||||||| |||||
Sbjct 17945 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 18004
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||| ||||| || || || || | || ||
Sbjct 18005 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 18064
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || |||||| |||| | |||||| || ||||||
Sbjct 18065 AGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 18124
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| || |||| || || || ||||| || ||
Sbjct 18125 CTCGATGACGCGC------------TCGACGTTATCA---CCCCAGATGCCGACTGCAAC 18169
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| | |||| | | ||| | |||| |||||| ||
Sbjct 18170 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGA 18229
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || |||| ||| ||| ||||| || || |||||||||| | |||||
Sbjct 18230 TCTTTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 18289
Query 1630545 GGCGTCGAG 1630553
| ||||||
Sbjct 18290 AGAGTCGAG 18298
>seq473
Length=419108
Score = 179 bits (198), Expect = 5e-39
Identities = 273/389 (70%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||||||| ||| |||| ||||| ||||| ||||| |
Sbjct 189703 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 189762
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
||| | ||| |||| |||||||||||| || | || ||||| || |||||| || || |
Sbjct 189763 CTGACGGAGTCCGATATCCAGCCTCAGCTGAACCGCCGCCGCCCCGGCCAGAGCTCAATC 189822
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| ||||| | |||||| || |||||| | |||||| || || ||| ||| ||
Sbjct 189823 ACGACGCCTAGAAACGAGAAGGACCGCGTCGTTATCCAGAGCGGTACCGAGTTCGGTGTC 189882
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339
|| |||||| | || | ||| | | || ||| ||||| || ||| |||||
Sbjct 189883 ACCCTCGGCACCCCGATTGGCATGCTCGTCCAGAACGAGGACCAACGTCCCAAGGACTAC 189942
Query 18340 TCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| || ||| || | | || || || || |||||||| | |||||| | |
Sbjct 189943 GGCAACTCTACGATGGACATGTTCCCCCGCCCGTCCCACGCCGATTGGACCTACCTCGAG 190002
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
||||||||| ||||||| || || ||||| ||||| || || ||||||||||| |
Sbjct 190003 AAGTACGGCGTCAAGGCCTCCTCCGGCGGTGGCCGCTCCTCCGCCCGCGAGACAATTGCC 190062
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
||||| ||||||||||| |||| |||||
Sbjct 190063 CGCGTTGCCGCCGGCGCCCTCGCTGAGAA 190091
Score = 111 bits (122), Expect = 2e-18
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
|| |||||||| ||||| || || || ||||| |||||| || | | ||||||
Sbjct 190324 GACGACAGCATTGGCGGAACCGTCACCTGCGTCATCCGCAACCCACCCTCGGCGCTCGGC 190383
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| |||||||||||| | ||||| ||||||| ||||| ||||| ||||| |||
Sbjct 190384 GAGCCCTGCTTTGACAAGCTTGAGGCTTCGCTCGCACACGCTATGCTCAGCATCCCCGCC 190443
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194
|| ||||| |||||||| ||| ||| ||||
Sbjct 190444 ACAAAGGGCTTCGAGATCGGCTCCGGCTTTG 190474
>seq818
Length=69193
Score = 145 bits (160), Expect = 9e-29
Identities = 95/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| |||||||||||||| ||||| | || |||||| | || ||||||||||
Sbjct 48145 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGCAAGACCGTTGCCAACATGA 48086
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 48085 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACATCA 48041
>seq540
Length=221612
Score = 123 bits (136), Expect = 3e-22
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| ||||| ||||||| | ||| |||| | || |||||| | |
Sbjct 151619 TCGACGTCGTTCGCAACCGCATCAAGGGCTTCGCGCAGAAGAAGGTCACCCTGCCCCAGG 151678
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| ||||||||| | ||||||| |||||||||||| || | || || | || || ||||
Sbjct 151679 GCCGCCACAAGCTCGTCATCCTTGACGAGGCCGACAGCATGACATCAGGCGCTCAACAGG 151738
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
| ||||| || ||||||| || |||||||||||||||| ||| | || ||||||
Sbjct 151739 CTCTGCGCCGGACAATGGAAATTTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 151798
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238
||| | | |||||||| | || || || |||||||| || ||||
Sbjct 151799 AGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCGCT 151849
>seq686
Length=266282
Score = 114 bits (126), Expect = 2e-19
Identities = 173/244 (71%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | || ||| ||| || |||||||||||||| | || |||||
Sbjct 148477 GCCTTCTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 148536
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | ||||||| ||| ||| || ||||||
Sbjct 148537 TTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGA-- 148594
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| || ||||||||||| || ||||| |||||||| ||| | | || |||||||||||
Sbjct 148595 CCAGGAGGCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 148654
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|| || ||||| | ||| | | ||||| | ||| |||| |||||| || ||||
Sbjct 148655 GAAGAGCGCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGA 148714
Query 868929 TGAT 868932
||||
Sbjct 148715 TGAT 148718
Score = 111 bits (122), Expect = 2e-18
Identities = 141/192 (73%), Gaps = 3/192 (2%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| || ||| | |||||| |||| || || |||||||| || |||||
Sbjct 148791 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTT 148850
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||||||||||| | ||| || ||| ||||| ||||| || ||||||||
Sbjct 148851 CTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAA 148910
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| | | || |||| ||| |||| | || | ||| | | |||||||||||| |||||
Sbjct 148911 GGCAACCAGACGCTGGGCGAAGGAG--GA-GTTCTCATCGCTGATCCACTTCAGGGCCCA 148967
Query 869359 GTCGGCCTTTTT 869370
||| ||||| ||
Sbjct 148968 GTCAGCCTTCTT 148979
>seq166
Length=374341
Score = 95.1 bits (104), Expect = 1e-13
Identities = 243/361 (67%), Gaps = 13/361 (4%)
Strand=Plus/Plus
Query 1726694 GCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGAA 1726752
|| ||||||| | |||||||| || || |||| | | | ||||||||||||||||||||
Sbjct 116167 GCCGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGAA 116225
Query 1726753 GCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCG 1726812
||||| || | | ||| | || || | ||||||||| | |||| || || |||||
Sbjct 116226 GCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGATTCCGTGGTGCG 116285
Query 1726813 CGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGAG-GACT 1726869
||||| | ||| || || | | || || | || |||| ||| | |
Sbjct 116286 GGCGCCGATGGCACCAACCGAGATGAAATCGGCGAGGAACTGGGGGG----AGATTGTGT 116341
Query 1726870 -GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGGC 1726928
||| | |||| ||| | |||| || || | || ||| |||| || || |||
Sbjct 116342 CGAGCATCTCGCTGGCAATGGGC--ATGCCCGCAGTCGT-GAGGTCGCTGAAGAGCTGGC 116398
Query 1726929 GCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCA 1726988
| || |||||| | | | | | | ||||| ||| |||||| || |
Sbjct 116399 GGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGATGA 116458
Query 1726989 GGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCAAA 1727048
|||||||||| |||||||| ||||||||||| |||| ||||||||||||| ||||| |
Sbjct 116459 GGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGATGACGCAGA 116518
Query 1727049 G 1727049
|
Sbjct 116519 G 116519
>seq121
Length=229515
Score = 91.5 bits (100), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439
||||| ||| || ||||| ||||||| || | || || ||| | ||||| ||
Sbjct 193246 CCGGTGCTGCCGAACCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCGACG 193187
Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499
|||||| | || ||||||| | |||||||||||| ||||||| |
Sbjct 193186 ACCTCGGGAGTGAAGATGCGCTCGATGATGAGCTGGGCGATGCGG---TCGCCCTCAGCG 193130
Query 1572500 ACGTGG---TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556
|| | |||| ||||| |||||||||||| | ||| |||| |||||| ||||||
Sbjct 193129 ACTTCAAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCG 193070
Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATG 1572586
|| ||||||||||| |||||| |||||||
Sbjct 193069 GCGTCGATGACGCCGGCGCCGGTGTCGATG 193040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107062961909493
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