Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq572 183 4e-40 seq473 179 5e-39 seq818 145 9e-29 seq540 123 3e-22 seq686 114 2e-19 seq166 95.1 1e-13 seq121 91.5 2e-12 >seq572 Length=609512 Score = 183 bits (202), Expect = 4e-40 Identities = 333/489 (68%), Gaps = 15/489 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||||||||| || |||| ||||||||| || |||||||| | || ||||| || Sbjct 17825 CTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 17884 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||||||| || | |||| ||| | ||| || | ||| ||| | || Sbjct 17885 GGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 17944 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || ||| ||||||||| | ||||| ||||| ||||||||||| ||||| Sbjct 17945 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 18004 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||| ||||| || || || || | || || Sbjct 18005 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 18064 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || |||||| |||| | |||||| || |||||| Sbjct 18065 AGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 18124 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| || |||| || || || ||||| || || Sbjct 18125 CTCGATGACGCGC------------TCGACGTTATCA---CCCCAGATGCCGACTGCAAC 18169 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| | |||| | | ||| | |||| |||||| || Sbjct 18170 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTATGA 18229 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || |||| ||| ||| ||||| || || |||||||||| | ||||| Sbjct 18230 TCTTTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 18289 Query 1630545 GGCGTCGAG 1630553 | |||||| Sbjct 18290 AGAGTCGAG 18298 >seq473 Length=419108 Score = 179 bits (198), Expect = 5e-39 Identities = 273/389 (70%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| ||| |||| ||||| ||||| ||||| | Sbjct 189703 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 189762 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 ||| | ||| |||| |||||||||||| || | || ||||| || |||||| || || | Sbjct 189763 CTGACGGAGTCCGATATCCAGCCTCAGCTGAACCGCCGCCGCCCCGGCCAGAGCTCAATC 189822 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | ||||| | |||||| || |||||| | |||||| || || ||| ||| || Sbjct 189823 ACGACGCCTAGAAACGAGAAGGACCGCGTCGTTATCCAGAGCGGTACCGAGTTCGGTGTC 189882 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339 || |||||| | || | ||| | | || ||| ||||| || ||| ||||| Sbjct 189883 ACCCTCGGCACCCCGATTGGCATGCTCGTCCAGAACGAGGACCAACGTCCCAAGGACTAC 189942 Query 18340 TCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | || ||| || | | || || || || |||||||| | |||||| | | Sbjct 189943 GGCAACTCTACGATGGACATGTTCCCCCGCCCGTCCCACGCCGATTGGACCTACCTCGAG 190002 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||||||| ||||||| || || ||||| ||||| || || ||||||||||| | Sbjct 190003 AAGTACGGCGTCAAGGCCTCCTCCGGCGGTGGCCGCTCCTCCGCCCGCGAGACAATTGCC 190062 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||||| ||||||||||| |||| ||||| Sbjct 190063 CGCGTTGCCGCCGGCGCCCTCGCTGAGAA 190091 Score = 111 bits (122), Expect = 2e-18 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 || |||||||| ||||| || || || ||||| |||||| || | | |||||| Sbjct 190324 GACGACAGCATTGGCGGAACCGTCACCTGCGTCATCCGCAACCCACCCTCGGCGCTCGGC 190383 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| |||||||||||| | ||||| ||||||| ||||| ||||| ||||| ||| Sbjct 190384 GAGCCCTGCTTTGACAAGCTTGAGGCTTCGCTCGCACACGCTATGCTCAGCATCCCCGCC 190443 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194 || ||||| |||||||| ||| ||| |||| Sbjct 190444 ACAAAGGGCTTCGAGATCGGCTCCGGCTTTG 190474 >seq818 Length=69193 Score = 145 bits (160), Expect = 9e-29 Identities = 95/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| |||||||||||||| ||||| | || |||||| | || |||||||||| Sbjct 48145 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGCAAGACCGTTGCCAACATGA 48086 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 48085 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACATCA 48041 >seq540 Length=221612 Score = 123 bits (136), Expect = 3e-22 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| | ||| |||| | || |||||| | | Sbjct 151619 TCGACGTCGTTCGCAACCGCATCAAGGGCTTCGCGCAGAAGAAGGTCACCCTGCCCCAGG 151678 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||| |||||||||||| || | || || | || || |||| Sbjct 151679 GCCGCCACAAGCTCGTCATCCTTGACGAGGCCGACAGCATGACATCAGGCGCTCAACAGG 151738 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | ||||| || ||||||| || |||||||||||||||| ||| | || |||||| Sbjct 151739 CTCTGCGCCGGACAATGGAAATTTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 151798 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238 ||| | | |||||||| | || || || |||||||| || |||| Sbjct 151799 AGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCGCT 151849 >seq686 Length=266282 Score = 114 bits (126), Expect = 2e-19 Identities = 173/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| ||| || |||||||||||||| | || ||||| Sbjct 148477 GCCTTCTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 148536 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||||| ||| ||| || |||||| Sbjct 148537 TTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGA-- 148594 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || ||||||||||| || ||||| |||||||| ||| | | || ||||||||||| Sbjct 148595 CCAGGAGGCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 148654 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || ||||| | ||| | | ||||| | ||| |||| |||||| || |||| Sbjct 148655 GAAGAGCGCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGA 148714 Query 868929 TGAT 868932 |||| Sbjct 148715 TGAT 148718 Score = 111 bits (122), Expect = 2e-18 Identities = 141/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| |||| || || |||||||| || ||||| Sbjct 148791 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTT 148850 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||||| | ||| || ||| ||||| ||||| || |||||||| Sbjct 148851 CTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAA 148910 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | || |||| ||| |||| | || | ||| | | |||||||||||| ||||| Sbjct 148911 GGCAACCAGACGCTGGGCGAAGGAG--GA-GTTCTCATCGCTGATCCACTTCAGGGCCCA 148967 Query 869359 GTCGGCCTTTTT 869370 ||| ||||| || Sbjct 148968 GTCAGCCTTCTT 148979 >seq166 Length=374341 Score = 95.1 bits (104), Expect = 1e-13 Identities = 243/361 (67%), Gaps = 13/361 (4%) Strand=Plus/Plus Query 1726694 GCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGAA 1726752 || ||||||| | |||||||| || || |||| | | | |||||||||||||||||||| Sbjct 116167 GCCGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGAA 116225 Query 1726753 GCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCG 1726812 ||||| || | | ||| | || || | ||||||||| | |||| || || ||||| Sbjct 116226 GCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGATTCCGTGGTGCG 116285 Query 1726813 CGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGAG-GACT 1726869 ||||| | ||| || || | | || || | || |||| ||| | | Sbjct 116286 GGCGCCGATGGCACCAACCGAGATGAAATCGGCGAGGAACTGGGGGG----AGATTGTGT 116341 Query 1726870 -GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGGC 1726928 ||| | |||| ||| | |||| || || | || ||| |||| || || ||| Sbjct 116342 CGAGCATCTCGCTGGCAATGGGC--ATGCCCGCAGTCGT-GAGGTCGCTGAAGAGCTGGC 116398 Query 1726929 GCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCA 1726988 | || |||||| | | | | | | ||||| ||| |||||| || | Sbjct 116399 GGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGATGA 116458 Query 1726989 GGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCAAA 1727048 |||||||||| |||||||| ||||||||||| |||| ||||||||||||| ||||| | Sbjct 116459 GGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGATGACGCAGA 116518 Query 1727049 G 1727049 | Sbjct 116519 G 116519 >seq121 Length=229515 Score = 91.5 bits (100), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439 ||||| ||| || ||||| ||||||| || | || || ||| | ||||| || Sbjct 193246 CCGGTGCTGCCGAACCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCGACG 193187 Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499 |||||| | || ||||||| | |||||||||||| ||||||| | Sbjct 193186 ACCTCGGGAGTGAAGATGCGCTCGATGATGAGCTGGGCGATGCGG---TCGCCCTCAGCG 193130 Query 1572500 ACGTGG---TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556 || | |||| ||||| |||||||||||| | ||| |||| |||||| |||||| Sbjct 193129 ACTTCAAAATCGGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCG 193070 Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATG 1572586 || ||||||||||| |||||| ||||||| Sbjct 193069 GCGTCGATGACGCCGGCGCCGGTGTCGATG 193040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107062961909493