Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq572 149 1e-29 seq818 140 5e-27 seq540 138 2e-26 seq686 114 2e-19 >seq572 Length=609512 Score = 149 bits (164), Expect = 1e-29 Identities = 335/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| ||||| || |||| ||||||||| || |||||||| | | ||||| || Sbjct 17825 CTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 17884 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||||||| || | |||| ||| | ||| || | ||| ||| | || Sbjct 17885 GGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 17944 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || ||| ||||||||| | ||||| | || || || |||||||| ||||| Sbjct 17945 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 18004 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776 || ||||| |||||||||| | || ||||| || || || ||| | | || Sbjct 18005 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 18061 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 || || |||||||| ||||| | || ||| | ||| ||||||| | ||| Sbjct 18062 ACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 18121 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 ||| ||| |||||| | ||||| || || || ||||| || Sbjct 18122 GGTCTCGATGACGCGC------------TCGACGTTATCA---CCCCAGATGCCGACTGC 18166 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956 || ||||||||||||| |||||||| |||| | | | | | |||| |||||| Sbjct 18167 AACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTA 18226 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 || | ||||||| | ||| ||||| |||| | |||||| |||| | || Sbjct 18227 TGATCTTTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAAT 18286 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||| | |||||| | |||||||| Sbjct 18287 GGCAGAGTCGAGCTCTTCCTTGTG 18310 >seq818 Length=69193 Score = 140 bits (154), Expect = 5e-27 Identities = 94/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| ||||||||||| |||||||| | || ||||||||||| |||||| | | Sbjct 48145 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGCAAGACCGTTGCCAACATGA 48086 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 |||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 48085 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACATCA 48041 >seq540 Length=221612 Score = 138 bits (152), Expect = 2e-26 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253 |||||| | |||||||||||| | ||||||| || ||||||||| || | || || | Sbjct 151668 CCTGCCCCAGGGCCGCCACAAGCTCGTCATCCTTGACGAGGCCGACAGCATGACATCAGG 151727 Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313 || || ||||| || || ||| ||||||| ||| ||||||||||||| || || | Sbjct 151728 CGCTCAACAGGCTCTGCGCCGGACAATGGAAATTTACTCCAACACGACGCGCTTCGCCTT 151787 Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 ||||||||| ||| | | ||||||| | || ||| || ||||||||| | || Sbjct 151788 CGCCTGCAACCAGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCG 151847 Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 || || || |||||||||| ||| ||| | ||| |||| | || || || || || Sbjct 151848 CTACGCCCGACTCACCGACGAGCAGGTCGTCAAGCGACTGCTGCAAATCATTGAAGCTGA 151907 Query 2019434 AAAGGT 2019439 |||||| Sbjct 151908 AAAGGT 151913 >seq686 Length=266282 Score = 114 bits (126), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| ||| || |||||||||||||| | || ||||| |||||| | ||| Sbjct 148495 ACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAG 148554 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGCGGTCGGCGA 794034 ||||||| | | |||| ||| ||| || |||||| | || ||||||||||| | Sbjct 148555 GGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGA--CCAGGAGGCGGTCGGCAA 148612 Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCG 794094 |||| ||||||||||| ||| | | || ||||||||||| || || |||||| | Sbjct 148613 CGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCAGGGCAGAG 148672 Query 794095 ACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||| ||| ||||| | ||| |||| |||||| || | |||||| Sbjct 148673 CCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGAT 148718 Score = 107 bits (118), Expect = 3e-17 Identities = 98/121 (81%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| |||||| ||||||| ||| | || | || ||||||| |||||||||||| Sbjct 149049 GTGTCAATGGCGTTGAAGAGGTAGGTGCGCTGCG-CGGGCTCCTTGATGTAGGTGTCGAT 149107 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||||| ||||||||||| ||||||||||| || || |||||||||||| || ||||| Sbjct 149108 GAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 149167 Query 794667 G 794667 | Sbjct 149168 G 149168 Score = 93.3 bits (102), Expect = 7e-13 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| ||| || || |||||||| || ||||| Sbjct 148791 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTT 148850 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||||| ||| || ||| ||||| ||||| || |||||||| Sbjct 148851 CTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAA 148910 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || || |||| ||| || | | | ||| | | |||||||||||| ||||| Sbjct 148911 GGCAACCAGACGCTGGGCGAAGGAG---GAGTTCTCATCGCTGATCCACTTCAGGGCCCA 148967 Query 794520 CTCTGCCTTTTT 794531 || ||||| || Sbjct 148968 GTCAGCCTTCTT 148979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916147578032831