Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq572 149 1e-29
seq818 140 5e-27
seq540 138 2e-26
seq686 114 2e-19
>seq572
Length=609512
Score = 149 bits (164), Expect = 1e-29
Identities = 335/504 (66%), Gaps = 21/504 (4%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||| ||||| ||||| || |||| ||||||||| || |||||||| | | ||||| ||
Sbjct 17825 CTGATCGACGTAGCGAGCAGTGTTGTTAAAGACACGAAGCATGGGAATGACACCGTTCGA 17884
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||||||| || | |||| ||| | ||| || | ||| ||| | ||
Sbjct 17885 GGTGCCGTTGGTGCCTGCAATATAGGAGCCAGTGGCACGGATACGGTGAGCGTTGAGACC 17944
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| || ||| ||||||||| | ||||| | || || || |||||||| |||||
Sbjct 17945 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 18004
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776
|| ||||| |||||||||| | || ||||| || || || ||| | | ||
Sbjct 18005 AATAGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 18061
Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836
|| || |||||||| ||||| | || ||| | ||| ||||||| | |||
Sbjct 18062 ACCAGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 18121
Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896
||| ||| |||||| | ||||| || || || ||||| ||
Sbjct 18122 GGTCTCGATGACGCGC------------TCGACGTTATCA---CCCCAGATGCCGACTGC 18166
Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTA 2073956
|| ||||||||||||| |||||||| |||| | | | | | |||| ||||||
Sbjct 18167 AACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGCAGGTA 18226
Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016
|| | ||||||| | ||| ||||| |||| | |||||| |||| | ||
Sbjct 18227 TGATCTTTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAAT 18286
Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040
||| | |||||| | ||||||||
Sbjct 18287 GGCAGAGTCGAGCTCTTCCTTGTG 18310
>seq818
Length=69193
Score = 140 bits (154), Expect = 5e-27
Identities = 94/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||| ||||||||||| |||||||| | || ||||||||||| |||||| | |
Sbjct 48145 CCAACTACCTGGACATCAAGCCTCTCCTCGACGTCGGCTGCAAGACCGTTGCCAACATGA 48086
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
|||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 48085 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTCAACATCA 48041
>seq540
Length=221612
Score = 138 bits (152), Expect = 2e-26
Identities = 178/246 (72%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253
|||||| | |||||||||||| | ||||||| || ||||||||| || | || || |
Sbjct 151668 CCTGCCCCAGGGCCGCCACAAGCTCGTCATCCTTGACGAGGCCGACAGCATGACATCAGG 151727
Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313
|| || ||||| || || ||| ||||||| ||| ||||||||||||| || || |
Sbjct 151728 CGCTCAACAGGCTCTGCGCCGGACAATGGAAATTTACTCCAACACGACGCGCTTCGCCTT 151787
Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373
||||||||| ||| | | ||||||| | || ||| || ||||||||| | ||
Sbjct 151788 CGCCTGCAACCAGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCG 151847
Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433
|| || || |||||||||| ||| ||| | ||| |||| | || || || || ||
Sbjct 151848 CTACGCCCGACTCACCGACGAGCAGGTCGTCAAGCGACTGCTGCAAATCATTGAAGCTGA 151907
Query 2019434 AAAGGT 2019439
||||||
Sbjct 151908 AAAGGT 151913
>seq686
Length=266282
Score = 114 bits (126), Expect = 2e-19
Identities = 162/226 (72%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976
|| ||| ||| || |||||||||||||| | || ||||| |||||| | |||
Sbjct 148495 ACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAG 148554
Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGCGGTCGGCGA 794034
||||||| | | |||| ||| ||| || |||||| | || ||||||||||| |
Sbjct 148555 GGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGA--CCAGGAGGCGGTCGGCAA 148612
Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCG 794094
|||| ||||||||||| ||| | | || ||||||||||| || || |||||| |
Sbjct 148613 CGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGCGCAGGGCAGAG 148672
Query 794095 ACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140
||| ||| ||||| | ||| |||| |||||| || | ||||||
Sbjct 148673 CCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGAT 148718
Score = 107 bits (118), Expect = 3e-17
Identities = 98/121 (81%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| |||||| ||||||| ||| | || | || ||||||| ||||||||||||
Sbjct 149049 GTGTCAATGGCGTTGAAGAGGTAGGTGCGCTGCG-CGGGCTCCTTGATGTAGGTGTCGAT 149107
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|||||| ||||||||||| ||||||||||| || || |||||||||||| || |||||
Sbjct 149108 GAGGAGGGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 149167
Query 794667 G 794667
|
Sbjct 149168 G 149168
Score = 93.3 bits (102), Expect = 7e-13
Identities = 136/192 (71%), Gaps = 3/192 (2%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| || ||| | |||||| ||| || || |||||||| || |||||
Sbjct 148791 ACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTT 148850
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||||||||||| ||| || ||| ||||| ||||| || ||||||||
Sbjct 148851 CTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATACCCTCAACAGCGGCAAA 148910
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| | || || |||| ||| || | | | ||| | | |||||||||||| |||||
Sbjct 148911 GGCAACCAGACGCTGGGCGAAGGAG---GAGTTCTCATCGCTGATCCACTTCAGGGCCCA 148967
Query 794520 CTCTGCCTTTTT 794531
|| ||||| ||
Sbjct 148968 GTCAGCCTTCTT 148979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916147578032831
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |