Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq477 114 8e-21
seq356 105 4e-18
seq863 102 5e-17
>seq477
Length=261965
Score = 114 bits (126), Expect = 8e-21
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || ||| |||| |||| || || ||||| || |||||||
Sbjct 234211 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 234270
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| | || | ||||||||||| | || || |||||
Sbjct 234271 TCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 234330
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || |
Sbjct 234331 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 234390
Query 34968 A 34968
|
Sbjct 234391 A 234391
>seq356
Length=254992
Score = 105 bits (116), Expect = 4e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| || || | || ||||||||||||||| || ||||| ||| |||| ||||
Sbjct 83970 CAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATC 84029
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||||||||||||||||| || |||||||| | || | |||||||| ||
Sbjct 84030 CTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATC 84089
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | || | || || || | || || ||
Sbjct 84090 TTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGT 84149
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || || |||||||| || || ||||||||
Sbjct 84150 CTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 105 bits (116), Expect = 4e-18
Identities = 147/204 (72%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||||||| ||||| || ||| |||| ||||
Sbjct 84199 AGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 84258
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| || || ||||||| || |||||||| | || | |||||||| ||
Sbjct 84259 TCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 84318
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| ||| | |||||| || | ||| ||
Sbjct 84319 TGAATCTTCGACTTGAC--AT--TGTCGATAGTATCAGAAGACTCGACCTCGAGGGTGAT 84374
Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965
|||||| || ||||| ||||| ||
Sbjct 84375 GGTCTTGCCAGTGAGCGTCTTGAC 84398
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|||||||| || | ||| |||||||| || || ||||| | |||| ||||
Sbjct 83743 AGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCT 83802
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||| |||||||| || || |||||||| | || | |||||||||||
Sbjct 83803 TCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 83862
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | |||| ||| | |||||| || | || || |||
Sbjct 83863 TGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTC 83922
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || ||||| || |||||||||||
Sbjct 83923 TTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/194 (70%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||||||||| ||||| || ||| |||| | ||
Sbjct 84485 AGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 84544
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || ||||| || || || ||||| || | || | |||||||||||
Sbjct 84545 TCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCC 84604
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || || || | ||||||| || || |||||| || | || ||
Sbjct 84605 TGGATCTTGGACTTCAC----GTTATCGATGGTATCGGAGGACTCGACCTCGAGAGTGAT 84660
Query 34942 GGTCTTTCCCGTGA 34955
|||||| || ||||
Sbjct 84661 GGTCTTGCCGGTGA 84674
>seq863
Length=517823
Score = 102 bits (112), Expect = 5e-17
Identities = 130/177 (73%), Gaps = 8/177 (5%)
Strand=Plus/Minus
Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867
|| ||| |||| | || || || |||||||||||||||||||| || |||||||| |
Sbjct 7428 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGG 7369
Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGC 34923
|| | ||||||||||| | || || ||||| || | ||||| || |
Sbjct 7368 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGA 7313
Query 34924 CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
||| || |||| ||| || ||||| ||||| |||||||| || ||||||||||||||
Sbjct 7312 CTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 7256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325689112445051
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |