Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_023423.1 Length=610033 Score E Sequences producing significant alignments: (Bits) Value seq673 87.8 7e-12 >seq673 Length=46916 Score = 87.8 bits (96), Expect = 7e-12 Identities = 119/163 (73%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 309684 CTCCATCAACTTGGCGATAGTCATACGAGAAGGAATGGCAAGAGGGTTGATGAGAATGTC 309743 ||| ||||| | ||| || ||||||||||| ||||| || |||| ||||||| |||||| Sbjct 30453 CTCGATCAAGTGGGCAATGGTCATACGAGACGGAATTGCGTGAGGATTGATGATAATGTC 30394 Query 309744 AGGTCTCATTCCGGTGATTGGGTTGAAAGGCATATCTTCTT-CAGGTACAATCAAACCAA 309802 || | || || | | | || ||||||||||||| | | || | | | ||||| Sbjct 30393 CGGCGTGATGCCCTCG---CCGGTAAAGGGCATATCTTCTTGCCGATA-AGTGACACCAA 30338 Query 309803 TAGTTCCCTTTTGAGCGTGCCTGGAAGCAAACTTGTCACCAAT 309845 | || ||||| || |||| | || |||||||| |||||||| Sbjct 30337 TGGTACCCTTCTGGCCGTGACGTGAGGCAAACTTATCACCAAT 30295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1951951166014712