Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq356 109 4e-19
>seq356
Length=254992
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
||||| || | ||| || || || || || |||||||| ||||||| | ||||||| |
Sbjct 83968 CGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCA 84027
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || || || || | ||||| | ||||| || || ||||||||||| ||
Sbjct 84028 TCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTA 84087
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | || ||||| | || | ||||| ||| ||| || || || || ||
Sbjct 84088 TCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATC 84147
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || | ||| || || || ||||||||
Sbjct 84148 GTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385214838475989
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |