Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq356 120 6e-22
>seq356
Length=254992
Score = 120 bits (132), Expect = 6e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||||| || | |||||||| || || ||||| || || ||||| |
Sbjct 83954 TACCACCACGCAGGCGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCG 84013
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||| || || || || ||||| || ||||| | | || || || ||||
Sbjct 84014 ACAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAG 84073
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||||||||| ||||| | || || || ||||| || || || ||| |
Sbjct 84074 GAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCAATGGTGTCTGAAGATTCAA 84133
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || ||||||||||| || | ||||| || || ||||||||
Sbjct 84134 CCTCGAGCGTAATCGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182
Score = 113 bits (124), Expect = 9e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| ||||| ||||| ||||| || || ||||| || || || || |
Sbjct 84182 TACCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGG 84241
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || || || ||||| || ||||||||||| | | || || || || |
Sbjct 84242 ACAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGG 84301
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || |||||||| |||||||| | || ||||| || || |||||| || || |
Sbjct 84302 GGATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGA 84361
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798
| || | || || |||||||| || | |||||| ||
Sbjct 84362 CCTCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981815513494931
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |