Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq572 306 4e-78
seq863 125 7e-24
seq686 118 1e-21
seq356 116 4e-21
seq477 109 5e-19
>seq572
Length=609512
Score = 306 bits (338), Expect = 4e-78
Identities = 1151/1770 (65%), Gaps = 73/1770 (4%)
Strand=Plus/Plus
Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT- 148103
|||| |||||| |||||| ||||| || |||||||| || ||||| | || | ||
Sbjct 16560 TTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTG 16619
Query 148104 CGCTTT-ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCC 148162
|||| || ||||||||| | ||||||||||| ||||| | | ||||||||
Sbjct 16620 CGCTGGGAT----ATCTCCCAGACGGTCTTGTACAGAGCCTTGACCTCAGCGGGAATGTT 16675
Query 148163 GTCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTA 148222
| |||| ||| | || ||| | || | || | || ||| | || | |
Sbjct 16676 GGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCA 16735
Query 148223 TAGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGC 148282
||| | |||| || || | | || | | || || ||||| |||||||||||
Sbjct 16736 CAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTAACAACCTGGAACTCGCCGGC 16795
Query 148283 GAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAA 148342
|| || || || | || | |||| || | || || || ||||||||||||||||
Sbjct 16796 AAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAA 16855
Query 148343 AATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCG 148402
||||||| || | || || |||||| || || |||| |||||||| |||| |
Sbjct 16856 GATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTG 16915
Query 148403 ATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCA 148462
| || || | |||||||| |||| |||||||| || || | || |||||
Sbjct 16916 CTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCA 16975
Query 148463 CATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCC 148522
|||||||||||| || || || || ||| ||||||||||| | ||| | ||
Sbjct 16976 CATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCC 17035
Query 148523 GTGCGCCGCCGCCAGTTCG-CAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAA 148581
| | || ||||| | ||| || || || ||| ||| || |||||| |
Sbjct 17036 CTCCTCCTTGGCCAGCTGAACAGACATGGTC-AGAGCAGCGTGGTAGATGGTCTCGAAGA 17094
Query 148582 TTTGCCTGTTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAA 148638
| | | ||||||| | | | | | |||| ||| | ||||| || || | |
Sbjct 17095 TCTTCTTGTTGAG-ATCACGGGC--CTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGA 17151
Query 148639 ACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGC 148698
| || || ||||| ||||| || || | |||||||| ||||| |||||| | ||
Sbjct 17152 AAGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGC 17211
Query 148699 GCGCGCTCTCGAGCGGA-TAGTGGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCAC 148756
| || ||| || ||| ||||||||| || |||||||||| |||| ||||| || ||
Sbjct 17212 GAGC-CTCGGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAG-TTGCGAACAAC 17269
Query 148757 CACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTAC---------TTGTCATCTACGAT 148807
|||| || | | | ||| | || ||||| |||| || ||||
Sbjct 17270 GACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCGTAGACACCATCGTTGTAGTCAACGAA 17329
Query 148808 GCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTA 148867
| | || || || | || || | ||||| || || ||| || || |||| |||
Sbjct 17330 GG-TGGG--CAGAGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTA 17386
Query 148868 CTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCT 148927
||| | |||||| | ||| || ||| || ||| || | |||||| || |||||
Sbjct 17387 CTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCT 17446
Query 148928 CTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987
||||| |||| || |||||||| |||||| | || |||||| || ||| | ||
Sbjct 17447 CTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTC 17506
Query 148988 CACTATGA---ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---C 149041
| ||| ||| | || | ||| || |||| || || | |||||||| |
Sbjct 17507 GAGGATGGCATACCAAAGC---TTCTGGGC-----CTTGATGGTCTT-GCGACCCTTGCC 17557
Query 149042 CT---GCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGA 149096
|| ||||||| | ||| | ||| |||||| ||||||||||||| || | ||
Sbjct 17558 CTCGCGCTCGTACTTCTCGTACAAGGCC--TCGAACTCCTCGCCGTAGCAGTCAGCCAGG 17615
Query 149097 CCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATA 149156
|| ||||||| | ||||||||||| | ||| || ||| | | || | ||||||
Sbjct 17616 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 17675
Query 149157 AACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCC 149216
||||||||||| | |||||| ||| | ||||| || || | || || |||
Sbjct 17676 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 17735
Query 149217 ATGTTGCGGCGCAGGTTGA-GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACAC 149275
||| ||||| || | | || | ||| | ||| |||||||| ||||||| ||| |
Sbjct 17736 TGGTTCTTGCGCAAGTCCATGAACTC-GAAGACGTCGGCGTGCCAGGGCTCAAGGTAGAT 17794
Query 149276 CGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAA 149332
|||| ||||| ||| ||||| ||||| ||||||| ||| | ||||||||||
Sbjct 17795 AGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAA 17854
Query 149333 CACTCGAACCATAGGTTCAATGCCAC---TGGCAGTGCCGTTAGT-AGAGCTA-ATGCGA 149387
|| |||| ||| || |||| ||| | | |||||||| || || | || ||
Sbjct 17855 GACACGAAGCATGGG---AATGACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGA 17911
Query 149388 CTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGAT 149446
||| || || | ||| |||||| || ||||| || ||| | ||| |||||
Sbjct 17912 --GCCAGTGGCACGGATACGGTGAGCGTTGAGACCAATGCCACCAGCCAT-CTTGGAGAT 17968
Query 149447 GGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAG 149506
|||||| ||| || |||||| ||||| || ||| ||||||| |
Sbjct 17969 CATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGAC 18028
Query 149507 CAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGC 149566
|| ||||| || ||| || | | || || || ||| | |||||| |||
Sbjct 18029 GAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGC 18088
Query 149567 GTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCAT 149625
||| || || | || |||| ||| | | ||| | ||||| ||||| || | || ||
Sbjct 18089 GTGGGTGAAGAACTTGCTGG-ACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTAT 18147
Query 149626 CGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGT 149685
| || |||||| | || || ||||| | ||| ||||| |||| ||| || | |||
Sbjct 18148 CACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 18207
Query 149686 TTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAA 149745
||| ||||||| ||| |||| || |||||| |||| ||||| | ||||| |
Sbjct 18208 CATCAAGCTTGAGCAGGTATGATCTTTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGA 18267
Query 149746 AGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775
|||||||| ||| | ||||||| | |||||
Sbjct 18268 AGTCGCGGTCGTAGACAATGGCAGAGTCGA 18297
>seq863
Length=517823
Score = 125 bits (138), Expect = 7e-24
Identities = 122/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||||||||||||||| || ||| | || || |||||||||||||| |||||||| |||||
Sbjct 7414 GTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTT 7355
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | ||||||| | |||||| || | |||||
Sbjct 7354 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 7295
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| ||||| ||||| || || ||||| |||||||||
Sbjct 7294 AGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 7258
>seq686
Length=266282
Score = 118 bits (130), Expect = 1e-21
Identities = 334/509 (66%), Gaps = 13/509 (3%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || |||| || |||||||| ||||| || ||||| | | || ||||| |
Sbjct 148482 CTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 148541
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || ||||| |||||| | || || || | ||| | || || ||
Sbjct 148542 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAG 148601
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530
||||| || || ||||||||||||| ||| | | | ||||||||| || | ||
Sbjct 148602 GCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGC 148661
Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590
|||| ||| |||| ||||||| |||||| | || || || || ||| |
Sbjct 148662 GCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTC 148721
Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGC--GCGTTCGGTAGTACA---GGCAC 120645
|| | | || | ||| | || ||| | | | | |||||| ||||
Sbjct 148722 CTCAAT------GACCTGCTTGTTGGGG-CGGTGCTTGAGGTGAG-AGTACAAGAGGCAG 148773
Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705
|||||||| ||||| || |||||||| || || || ||||||||| || ||||| ||
Sbjct 148774 GCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCA 148833
Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765
||||||| || | |||||| | || |||| |||||| || ||||| |
Sbjct 148834 GGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATA 148893
Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825
||||| || ||||||||| |||| |||| ||| || | | ||| | ||||
Sbjct 148894 CCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTGATC 148953
Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCG 120854
||||||| |||||| || ||||| |||||
Sbjct 148954 CACTTCAGGGCCCAGTCAGCCTTCTTGCG 148982
>seq356
Length=254992
Score = 116 bits (128), Expect = 4e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| ||||| ||||| || ||||| ||| | ||| ||||||||||
Sbjct 84491 AAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGC 84550
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| ||||||| |||||||| ||||| |||||||| |||||||| ||||
Sbjct 84551 TGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGGATC 84610
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | || | || |||| || ||| || |||| |||| ||| ||||||
Sbjct 84611 TTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCG 84670
Query 133635 GT 133636
||
Sbjct 84671 GT 84672
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| || || ||||| |||||||| |||| || ||| ||| | || || | ||
Sbjct 83751 ATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCA-TCTTCCAACT 83809
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || ||| | || || |||||||||||||||||||| || |||||||| |||||
Sbjct 83810 GCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCT 83869
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | |||| |||||| | | ||| || || | || | || || || |
Sbjct 83870 TGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTTCCAG 83929
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
|||| || || ||||| ||||||||
Sbjct 83930 TCAGCGTCTTGACGAAGATCTGCAT 83954
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || |||||||| || ||| ||| | ||||| |||||||| ||
Sbjct 83986 GTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCA-TCCTCAAGCTGCTTTCC 84044
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | ||||||||||||||||| || || ||||| || |||||| |||
Sbjct 84045 GGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCTTGGATCTTCGACTT 84104
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| ||||| | | || || |||| || | || |||||||| || ||
Sbjct 84105 GACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCGGTAAGGGT 84164
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 84165 CTTGACGAAAATCTGCAT 84182
Score = 89.7 bits (98), Expect = 5e-13
Identities = 134/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||| ||||| || ||||| ||| || ||| | | | ||||| || ||||||||
Sbjct 84214 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCAAGTTGCTTGCC 84272
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || | ||||||||||| || |||||||| ||||| || ||||| |||
Sbjct 84273 AGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTT 84332
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | || || | | ||| || |||| ||||| ||| ||||| || || ||
Sbjct 84333 GACATTGTCGATAGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGCGT 84392
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 84393 CTTGACGA 84400
>seq477
Length=261965
Score = 109 bits (120), Expect = 5e-19
Identities = 117/154 (76%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| ||| | || || ||||||||||| || |||||||| ||||||
Sbjct 234246 TCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 234305
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | |||||||| || ||| || || | ||| | |
Sbjct 234306 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATG 234365
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659
|| || || ||||| || || |||||| |||||
Sbjct 234366 GTCTTACCCGTCAGGGTCTTCACGAAA--CTGCA 234397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483415186275960
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