Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq572 306 4e-78 seq863 125 7e-24 seq686 118 1e-21 seq356 116 4e-21 seq477 109 5e-19 >seq572 Length=609512 Score = 306 bits (338), Expect = 4e-78 Identities = 1151/1770 (65%), Gaps = 73/1770 (4%) Strand=Plus/Plus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT- 148103 |||| |||||| |||||| ||||| || |||||||| || ||||| | || | || Sbjct 16560 TTAAGGGACTGGGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGAACAACGGTG 16619 Query 148104 CGCTTT-ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCC 148162 |||| || ||||||||| | ||||||||||| ||||| | | |||||||| Sbjct 16620 CGCTGGGAT----ATCTCCCAGACGGTCTTGTACAGAGCCTTGACCTCAGCGGGAATGTT 16675 Query 148163 GTCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTA 148222 | |||| ||| | || ||| | || | || | || ||| | || | | Sbjct 16676 GGGGATGTTCTGGATAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCA 16735 Query 148223 TAGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGC 148282 ||| | |||| || || | | || | | || || ||||| ||||||||||| Sbjct 16736 CAGGCCCATGTCGACGAGATCCTTCAACAACCAGGGGTTAACAACCTGGAACTCGCCGGC 16795 Query 148283 GAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAA 148342 || || || || | || | |||| || | || || || |||||||||||||||| Sbjct 16796 AAGAACACGACGTTGGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAA 16855 Query 148343 AATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCG 148402 ||||||| || | || || |||||| || || |||| |||||||| |||| | Sbjct 16856 GATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAAACTGTTGCGCACACCGTG 16915 Query 148403 ATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCA 148462 | || || | |||||||| |||| |||||||| || || | || ||||| Sbjct 16916 CTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAGAGGTCAGAGGGCTTGACATTCCA 16975 Query 148463 CATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCC 148522 |||||||||||| || || || || ||| ||||||||||| | ||| | || Sbjct 16976 CATGTCGTACTGGAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTGCC 17035 Query 148523 GTGCGCCGCCGCCAGTTCG-CAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAA 148581 | | || ||||| | ||| || || || ||| ||| || |||||| | Sbjct 17036 CTCCTCCTTGGCCAGCTGAACAGACATGGTC-AGAGCAGCGTGGTAGATGGTCTCGAAGA 17094 Query 148582 TTTGCCTGTTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAA 148638 | | | ||||||| | | | | | |||| ||| | ||||| || || | | Sbjct 17095 TCTTCTTGTTGAG-ATCACGGGC--CTCGGGAGACTCGAAAGGCATGCGAAGGGCGAGGA 17151 Query 148639 ACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGC 148698 | || || ||||| ||||| || || | |||||||| ||||| |||||| | || Sbjct 17152 AAGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGC 17211 Query 148699 GCGCGCTCTCGAGCGGA-TAGTGGTTGCGGTCGATGATCTTGT-CAAGATTGCGCACCAC 148756 | || ||| || ||| ||||||||| || |||||||||| |||| ||||| || || Sbjct 17212 GAGC-CTCGGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAG-TTGCGAACAAC 17269 Query 148757 CACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTAC---------TTGTCATCTACGAT 148807 |||| || | | | ||| | || ||||| |||| || |||| Sbjct 17270 GACCTGAGTGACCTCGTGAAGCTTCTGGAAGTCGTAGACACCATCGTTGTAGTCAACGAA 17329 Query 148808 GCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTA 148867 | | || || || | || || | ||||| || || ||| || || |||| ||| Sbjct 17330 GG-TGGG--CAGAGCAAGGGAAGCCAAGTTGCAGACAGCGACCTCGTCGGGTGCGCAGTA 17386 Query 148868 CTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCT 148927 ||| | |||||| | ||| || ||| || ||| || | |||||| || ||||| Sbjct 17387 CTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATAGTTCCGAGGTTCTTCTGGTTGCT 17446 Query 148928 CTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 ||||| |||| || |||||||| |||||| | || |||||| || ||| | || Sbjct 17447 CTTGCGGTTGGCAGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTC 17506 Query 148988 CACTATGA---ACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT---C 149041 | ||| ||| | || | ||| || |||| || || | |||||||| | Sbjct 17507 GAGGATGGCATACCAAAGC---TTCTGGGC-----CTTGATGGTCTT-GCGACCCTTGCC 17557 Query 149042 CT---GCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGA 149096 || ||||||| | ||| | ||| |||||| ||||||||||||| || | || Sbjct 17558 CTCGCGCTCGTACTTCTCGTACAAGGCC--TCGAACTCCTCGCCGTAGCAGTCAGCCAGG 17615 Query 149097 CCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATA 149156 || ||||||| | ||||||||||| | ||| || ||| | | || | |||||| Sbjct 17616 CCAGGGCACTCATTGGGGCACATGAGGGTCCAGTCGGCGTTCTTCTCGACTCTCTTCATG 17675 Query 149157 AACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCC 149216 ||||||||||| | |||||| ||| | ||||| || || | || || ||| Sbjct 17676 AACAGATCGGGGATCCAGAGAGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCA 17735 Query 149217 ATGTTGCGGCGCAGGTTGA-GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACAC 149275 ||| ||||| || | | || | ||| | ||| |||||||| ||||||| ||| | Sbjct 17736 TGGTTCTTGCGCAAGTCCATGAACTC-GAAGACGTCGGCGTGCCAGGGCTCAAGGTAGAT 17794 Query 149276 CGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAA 149332 |||| ||||| ||| ||||| ||||| ||||||| ||| | |||||||||| Sbjct 17795 AGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGATCGACGTAGCGAGCAGTGTTGTTAAA 17854 Query 149333 CACTCGAACCATAGGTTCAATGCCAC---TGGCAGTGCCGTTAGT-AGAGCTA-ATGCGA 149387 || |||| ||| || |||| ||| | | |||||||| || || | || || Sbjct 17855 GACACGAAGCATGGG---AATGACACCGTTCGAGGTGCCGTTGGTGCCTGCAATATAGGA 17911 Query 149388 CTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGAT 149446 ||| || || | ||| |||||| || ||||| || ||| | ||| ||||| Sbjct 17912 --GCCAGTGGCACGGATACGGTGAGCGTTGAGACCAATGCCACCAGCCAT-CTTGGAGAT 17968 Query 149447 GGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAG 149506 |||||| ||| || |||||| ||||| || ||| ||||||| | Sbjct 17969 CATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCTTCCTTCATGTCGAC 18028 Query 149507 CAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGC 149566 || ||||| || ||| || | | || || || ||| | |||||| ||| Sbjct 18029 GAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCAGCGTTGAAGAGTGTGGGGGAGGC 18088 Query 149567 GTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCAT 149625 ||| || || | || |||| ||| | | ||| | ||||| ||||| || | || || Sbjct 18089 GTGGGTGAAGAACTTGCTGG-ACATGAGGTTGTAGGTCTCGATGACGCGCTCGACGTTAT 18147 Query 149626 CGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGT 149685 | || |||||| | || || ||||| | ||| ||||| |||| ||| || | ||| Sbjct 18148 CACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 18207 Query 149686 TTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAA 149745 ||| ||||||| ||| |||| || |||||| |||| ||||| | ||||| | Sbjct 18208 CATCAAGCTTGAGCAGGTATGATCTTTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGA 18267 Query 149746 AGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 |||||||| ||| | ||||||| | ||||| Sbjct 18268 AGTCGCGGTCGTAGACAATGGCAGAGTCGA 18297 >seq863 Length=517823 Score = 125 bits (138), Expect = 7e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| || ||| | || || |||||||||||||| |||||||| ||||| Sbjct 7414 GTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTT 7355 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| | |||||| || | ||||| Sbjct 7354 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 7295 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| ||||| || || ||||| ||||||||| Sbjct 7294 AGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 7258 >seq686 Length=266282 Score = 118 bits (130), Expect = 1e-21 Identities = 334/509 (66%), Gaps = 13/509 (3%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||| || |||||||| ||||| || ||||| | | || ||||| | Sbjct 148482 CTGGTAGTCAGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 148541 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | || || || | ||| | || || || Sbjct 148542 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAGGAG 148601 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 ||||| || || ||||||||||||| ||| | | | ||||||||| || | || Sbjct 148602 GCGGTCGGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGAAGAGC 148661 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 |||| ||| |||| ||||||| |||||| | || || || || ||| | Sbjct 148662 GCAGGGCAGAGCCTCAGTGAGGAACTCCTGCTCAATCTTGACGGCATCAACGATGATGTC 148721 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGC--GCGTTCGGTAGTACA---GGCAC 120645 || | | || | ||| | || ||| | | | | |||||| |||| Sbjct 148722 CTCAAT------GACCTGCTTGTTGGGG-CGGTGCTTGAGGTGAG-AGTACAAGAGGCAG 148773 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 |||||||| ||||| || |||||||| || || || ||||||||| || ||||| || Sbjct 148774 GCAAAGTCGGTGTGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCA 148833 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||||| || | |||||| | || |||| |||||| || ||||| | Sbjct 148834 GGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCAAAAGCACCGCTGAAGAAGATA 148893 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825 ||||| || ||||||||| |||| |||| ||| || | | ||| | |||| Sbjct 148894 CCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCGAAGGAGGAGTTCTCATCGCTGATC 148953 Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCG 120854 ||||||| |||||| || ||||| ||||| Sbjct 148954 CACTTCAGGGCCCAGTCAGCCTTCTTGCG 148982 >seq356 Length=254992 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| ||| | ||| |||||||||| Sbjct 84491 AAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGC 84550 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| ||||||| |||||||| ||||| |||||||| |||||||| |||| Sbjct 84551 TGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGGATC 84610 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || |||| || ||| || |||| |||| ||| |||||| Sbjct 84611 TTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCG 84670 Query 133635 GT 133636 || Sbjct 84671 GT 84672 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| |||||||| |||| || ||| ||| | || || | || Sbjct 83751 ATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCA-TCTTCCAACT 83809 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || |||||||||||||||||||| || |||||||| ||||| Sbjct 83810 GCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCT 83869 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| |||||| | | ||| || || | || | || || || | Sbjct 83870 TGGACTTCACGTTATCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTTCCAG 83929 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 83930 TCAGCGTCTTGACGAAGATCTGCAT 83954 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| || ||| ||| | ||||| |||||||| || Sbjct 83986 GTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCA-TCCTCAAGCTGCTTTCC 84044 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||||||||| || || ||||| || |||||| ||| Sbjct 84045 GGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCTTGGATCTTCGACTT 84104 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | || || |||| || | || |||||||| || || Sbjct 84105 GACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCGGTAAGGGT 84164 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 84165 CTTGACGAAAATCTGCAT 84182 Score = 89.7 bits (98), Expect = 5e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | ||||| || |||||||| Sbjct 84214 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCAAGTTGCTTGCC 84272 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| || |||||||| ||||| || ||||| ||| Sbjct 84273 AGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGAATCTTCGACTT 84332 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | | ||| || |||| ||||| ||| ||||| || || || Sbjct 84333 GACATTGTCGATAGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGCGT 84392 Query 133643 TTTTACGA 133650 || |||| Sbjct 84393 CTTGACGA 84400 >seq477 Length=261965 Score = 109 bits (120), Expect = 5e-19 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| || |||||||| |||||| Sbjct 234246 TCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 234305 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| || ||| || || | ||| | | Sbjct 234306 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATG 234365 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 || || || ||||| || || |||||| ||||| Sbjct 234366 GTCTTACCCGTCAGGGTCTTCACGAAA--CTGCA 234397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415186275960