Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq356 105 2e-17
>seq356
Length=254992
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| ||||| || ||||| ||||| || |||||||| || ||||||
Sbjct 83951 CAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACGTTGGAAGTCGAGTCATCTGAC 83892
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||| || || || || || || || ||| ||
Sbjct 83891 ACGATTGATAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAG 83832
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| ||||||||||| |||||||||||||||||||| | |||||| ||| ||||| ||
Sbjct 83831 CGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACTTTGAGCGACTACAATATC 83772
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| || || || || || || ||
Sbjct 83771 CAGAAGGAATCAACCCTCCATCTGGT 83746
Score = 84.2 bits (92), Expect = 5e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || || || || || ||||| || | || || ||| ||| |||
Sbjct 84179 CAGATTTTCGTCAAGACCCTTACCGGCAAGACGATTACGCTCGAGGTTGAATCTTCAGAC 84120
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||| ||||| || || || ||| || ||| ||
Sbjct 84119 ACCATTGACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCCGACCAGCAG 84060
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | |||||||||||||||||| | || ||||| | || || | ||||||||| |
Sbjct 84059 CGCTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTGTCGGATTACAACATT 84000
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| ||||| || || ||
Sbjct 83999 CAGAAGGAGTCAACTCTGCATCTCGT 83974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181806733008609
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |